View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5908_low_13 (Length: 246)
Name: NF5908_low_13
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 9677486 - 9677252
Alignment:
| Q |
3 |
cactctcgcttctgttgatttcataaacaaggtatgtttgtgtccctcttttcattgctatccatgctgtgcttttattttgtgttaattgattaattaa |
102 |
Q |
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| T |
9677486 |
cactctcgcttctgttgatttcataaacaaggtatgtttgtgtcgctcttttcattgctatccatgctgtgcttttattttgtgttaattgattaattaa |
9677387 |
T |
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| Q |
103 |
tggatctctaccttcacaaacaattagtttattttatttcataacctaatttagagcaaattttattttctatttgaagcttttgtgttgttcgtcacta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9677386 |
tggatctctaccttcacaaacaattagtttattttatttcataacctaatttagagcaaattttattttctatttgaagcttttgtgttgttcgtcacta |
9677287 |
T |
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| Q |
203 |
ataaatcgtaagcatttagttgagagtcggttctc |
237 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
9677286 |
ataaatagtaagcatttagttgagagtcggttctc |
9677252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 50328072 - 50328104
Alignment:
| Q |
130 |
tttattttatttcataacctaatttagagcaaa |
162 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
50328072 |
tttattttatttcataacctaatttagagcaaa |
50328104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 50328189 - 50328218
Alignment:
| Q |
133 |
attttatttcataacctaatttagagcaaa |
162 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50328189 |
attttatttcataacctaatttagagcaaa |
50328218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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