View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5908_low_14 (Length: 228)
Name: NF5908_low_14
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908_low_14 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 90261 - 90060
Alignment:
| Q |
15 |
aaaatttatcaattattttcatttttaaatccctatcaagtgtctttaactctaataaaatgagtgttagactgagttgtgttaacacttattttaaatg |
114 |
Q |
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| T |
90261 |
aaaatttatcaattattttcatttttaaatccctatcaagtgcctttaactctaataaaatgagtgttagactgagttgtgttaacacttattttaaatg |
90162 |
T |
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| Q |
115 |
tttgattcattcaacacaatactgctcacgtaatgattcactgccaaacaaacaacacagtaactcattgaacaaaatgaaaaacaatgactttctgtgc |
214 |
Q |
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| T |
90161 |
tttgattcattcaacacaatactgctcacgtaatgattcactgccaaacaaacaacacagtaactcattgaacaaaatgaaaaacaatgactttctgtgc |
90062 |
T |
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| Q |
215 |
tg |
216 |
Q |
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|| |
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| T |
90061 |
tg |
90060 |
T |
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