View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5908_low_2 (Length: 639)
Name: NF5908_low_2
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 13 - 619
Target Start/End: Complemental strand, 47192937 - 47192331
Alignment:
| Q |
13 |
aatattgtgagaatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttca |
112 |
Q |
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| T |
47192937 |
aatattgtgagaatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttca |
47192838 |
T |
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| Q |
113 |
caaagatccaaacacaacttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaac |
212 |
Q |
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| T |
47192837 |
caaagatccaaacacaacttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaac |
47192738 |
T |
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| Q |
213 |
cgaaatcctcaacgcgagcactgtcgcaagaaagatcagcaggtttaaactcaggctcacacccttgtgtccaatcattacgattcttcaacttgtaacc |
312 |
Q |
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| T |
47192737 |
cgaaatcctcaacgcgagcactgtcgcaagaaagatcagcaggtttaaactcaggctcacacccttgtgtccaatcattacgattcttcaacttgtaacc |
47192638 |
T |
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| Q |
313 |
tttcaaacaataacatgttcttccattaacaggatcataactacacatgctattttctccacaaataccatgaacctcacatggttcagcaatagcttgc |
412 |
Q |
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| T |
47192637 |
tttcaaacaataacatgttcttccattaacaggatcataactacacatgctattttctccacaaataccatgaacctcacatggttcagcaatagcttgc |
47192538 |
T |
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| Q |
413 |
catgaaacttcccatgtcttagttttatcattgaagctataaacacgtgggttaccatcatgatccattttgagtaatctatgaagtttctttggataat |
512 |
Q |
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| T |
47192537 |
catgaaacttcccatgtcttagttttatcattgaagctataaacacgtgggttaccatcatgatccattttgagtaatctatgaagtttctttggataat |
47192438 |
T |
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| Q |
513 |
caatggtgacaaattggtatgcatcagaggacatgaaatggccaaaggaatcgagtagcgcgattttagtaacattataagttgatcttcctgcatcaac |
612 |
Q |
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| T |
47192437 |
caatggtgacaaattggtatgcatcagaggacatgaaatggccaaaggaatcgagtagcgcgattttagtaacattataagttgatcttcctgcatcaac |
47192338 |
T |
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| Q |
613 |
aggtaat |
619 |
Q |
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| T |
47192337 |
aggtaat |
47192331 |
T |
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