View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5908_low_3 (Length: 385)

Name: NF5908_low_3
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5908_low_3
NF5908_low_3
[»] chr8 (5 HSPs)
chr8 (142-385)||(9677602-9677844)
chr8 (142-370)||(9693357-9693585)
chr8 (18-114)||(9677870-9677965)
chr8 (200-245)||(30652024-30652069)
chr8 (63-91)||(9693594-9693622)
[»] chr4 (5 HSPs)
chr4 (152-366)||(35160435-35160649)
chr4 (152-364)||(35154044-35154256)
chr4 (198-363)||(15555032-15555197)
chr4 (237-364)||(37147414-37147541)
chr4 (200-245)||(16298996-16299041)
[»] chr3 (12 HSPs)
chr3 (195-356)||(46469649-46469810)
chr3 (195-350)||(5155227-5155382)
chr3 (198-357)||(46478252-46478411)
chr3 (270-370)||(47398294-47398394)
chr3 (177-368)||(4582480-4582671)
chr3 (197-355)||(16023908-16024066)
chr3 (281-370)||(47414938-47415027)
chr3 (179-268)||(51942045-51942134)
chr3 (273-357)||(46507113-46507197)
chr3 (252-362)||(46490048-46490158)
chr3 (255-362)||(46497368-46497475)
chr3 (252-352)||(45900912-45901012)
[»] chr6 (1 HSPs)
chr6 (200-351)||(16967863-16968014)
[»] chr2 (4 HSPs)
chr2 (217-369)||(20143500-20143652)
chr2 (195-323)||(20154383-20154511)
chr2 (217-369)||(20169858-20170010)
chr2 (200-245)||(39548117-39548162)
[»] chr1 (1 HSPs)
chr1 (200-245)||(33097480-33097525)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 142 - 385
Target Start/End: Complemental strand, 9677844 - 9677602
Alignment:
Q  142 tggctcaccttgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 241  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9677844 tggctcaccttgatcaatcaagcaccaaccatgcgaaagtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 9677745  T
Q  242 accattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgat 341  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9677744 accattgtctctccaagttgttctcagtatcatcgctgctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgat 9677645  T
Q  342 catctcaactccttcgtctctcatctcctctctgctcctcctca 385  Q
    ||||||||||||||||||||||||||||| |||| |||||||||    
T  9677644 catctcaactccttcgtctctcatctcctttctg-tcctcctca 9677602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 142 - 370
Target Start/End: Complemental strand, 9693585 - 9693357
Alignment:
Q  142 tggctcaccttgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 241  Q
    |||||||||||||| |||||||||||||| | |||||| ||||||||||  | |||||||||||||||||||||||||||||||| || |||||||||||    
T  9693585 tggctcaccttgatgaatcaagcaccaaccaagcgaaattttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttc 9693486  T
Q  242 accattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgat 341  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  9693485 accattgtctctccaagttgttctcagcatcatcgctgttggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgat 9693386  T
Q  342 catctcaactccttcgtctctcatctcct 370  Q
    |||||||||| ||| ||||||||||||||    
T  9693385 catctcaacttctttgtctctcatctcct 9693357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 9677965 - 9677870
Alignment:
Q  18 attgttgtgttcctcatcgaagtgtttctctccctgtgattgcttttctggtacagttgaaaaatcaaaagaaggaaattaacaaacaatggttcgc 114  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9677965 attgttgtgttcctcatggaagtgtttctctccctgtgatt-cttttctggtacagttggaaaatcaaaagaaggaaattaacaaacaatggttcgc 9677870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 30652024 - 30652069
Alignment:
Q  200 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 245  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  30652024 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 30652069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 9693622 - 9693594
Alignment:
Q  63 ttctggtacagttgaaaaatcaaaagaag 91  Q
    |||||||||||||||||||||||||||||    
T  9693622 ttctggtacagttgaaaaatcaaaagaag 9693594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 366
Target Start/End: Original strand, 35160435 - 35160649
Alignment:
Q  152 tgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtct 251  Q
    |||| ||||||||| |||| |  |||||||||| |||||  | | ||||||||||||||| ||||||||||| || ||| |||| ||||| |||||||||    
T  35160435 tgatgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtct 35160534  T
Q  252 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 351  Q
    ||||||||||| ||||| || ||| ||| ||||||||||||| | || |||||||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  35160535 ctccaagttgtgctcagcataatcactgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 35160634  T
Q  352 ccttcgtctctcatc 366  Q
    |||  ||||||||||    
T  35160635 cctcagtctctcatc 35160649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 152 - 364
Target Start/End: Original strand, 35154044 - 35154256
Alignment:
Q  152 tgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtct 251  Q
    |||| ||||||||  |||| || ||||||||||||||||  | ||||||||||| |||||||| |||||||| || ||  |||| ||||| || ||||||    
T  35154044 tgatgaatcaagctgcaaccatacgaaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtct 35154143  T
Q  252 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 351  Q
    |||||||| || ||    |||||||||| ||||||||| ||| | || | ||||||||||||| |||||||||  |||||||||  | ||||||||||||    
T  35154144 ctccaagtagtgcttgcaatcatcgctgctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaact 35154243  T
Q  352 ccttcgtctctca 364  Q
    |||||||||||||    
T  35154244 ccttcgtctctca 35154256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 363
Target Start/End: Original strand, 15555032 - 15555197
Alignment:
Q  198 aaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtccta 297  Q
    |||||||||||||| ||| || |  |||||||| | || ||||||||  | ||  | |||||| ||||||| |||||||||| ||||||||||||| | |    
T  15555032 aaacatctcttctctaaacaacccaacaacaacattgtgttttcacctctctcgattcaagttattctcagcatcatcgctgctggctctgagggttcca 15555131  T
Q  298 ctcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctc 363  Q
    | || ||||| ||||||||||||||||| || ||||||||| |||| ||||||||| || ||||||    
T  15555132 cacagcaacaacttctcgacttcctccgctttaaatccatccatcaactcaactccgtcatctctc 15555197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 364
Target Start/End: Original strand, 37147414 - 37147541
Alignment:
Q  237 ttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatcca 336  Q
    ||||| || ||||| |||||||||||||| ||||| ||||||| ||||||  ||||||| || ||||||||  ||||||||||||||   || |||||||    
T  37147414 ttttcgcccttgtcgctccaagttgttctaagtattatcgctgctggctccaagggtcccacacaacaacaaattctcgacttcctcgactttaaatcca 37147513  T
Q  337 tcgatcatctcaactccttcgtctctca 364  Q
    || ||||| ||||||  ||||| |||||    
T  37147514 tcaatcatgtcaacttattcgtttctca 37147541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 16298996 - 16299041
Alignment:
Q  200 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 245  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  16298996 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 16299041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 46469649 - 46469810
Alignment:
Q  195 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 294  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||| ||  |||| ||||||||| | ||||  ||  |||||| || |||||||||||    
T  46469649 gccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactccaagttatgctcaacattgtcgctgctgcctctgagggtc 46469748  T
Q  295 ctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttc 356  Q
     ||| |||||||| |||||||| |||||||| | |||||||||||| |||||||||||||||    
T  46469749 gtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaactccttc 46469810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 5155227 - 5155382
Alignment:
Q  195 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 294  Q
    ||||||||||| ||||  ||||||| |||||| ||| | || ||||| ||| ||||||| |||||||| || || |||||||||| ||||||||||||||    
T  5155227 gccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtc 5155326  T
Q  295 ctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaac 350  Q
    | || ||||||||||||||||||||||||| || ||||||||  || |||||||||    
T  5155327 ccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaac 5155382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 46478252 - 46478411
Alignment:
Q  198 aaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtccta 297  Q
    |||||||||||||| |||||||||||||||||| |||| ||||| ||| | || ||||||||||| || ||||| ||||||  ||| ||||||||||| |    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  298 ctcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcg 357  Q
    |||||||||| ||| || ||||||| |  | |||||||| |||||||||||||| |||||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcg 46478411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 47398394 - 47398294
Alignment:
Q  270 atcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 369  Q
    |||| ||||| ||||||||||||||| || |||||| ||||||||||||||||  ||| ||| ||||  || |||||||||||||||| |||||||||||    
T  47398394 atcaacgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactccttcgcctctcatctcc 47398295  T
Q  370 t 370  Q
    |    
T  47398294 t 47398294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 368
Target Start/End: Complemental strand, 4582671 - 4582480
Alignment:
Q  177 aaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcg 276  Q
    |||||||||||||   | |||||| |||||||||||||||||||||| || ||| | || ||||| ||| | || ||||||||||  ||||| || ||||    
T  4582671 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 4582572  T
Q  277 ctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctc 368  Q
    ||| ||||||||| || || ||   | ||||||||||||||||||| |  | |||||| |  ||||||||||||||||| |  |||||||||    
T  4582571 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaactcctttgcttctcatctc 4582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 16023908 - 16024066
Alignment:
Q  197 caaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcct 296  Q
    |||||||||||| |||||| |||||||||| ||| || | ||||| ||  | || || ||||||||||||||  | ||||||| ||| || ||||| ||     
T  16023908 caaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctcagccttatcgctgctggatccgagggaccg 16024007  T
Q  297 actcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactcctt 355  Q
    || ||||||||||||||| |||||||||| | | |||| | | || |||||||||||||    
T  16024008 acacaacaacagcttctccacttcctccgctccgaatctaccaataatctcaactcctt 16024066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 47415027 - 47414938
Alignment:
Q  281 tggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcct 370  Q
    ||||||||||||| | || || ||| ||||||||||||||||| | |  |||||||| ||||||||||||||||| | ||||||||||||    
T  47415027 tggctctgagggtaccacacatcaaaagcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcctctcatctcct 47414938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 51942045 - 51942134
Alignment:
Q  179 agtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcag 268  Q
    |||||||||||   | ||||||||| | ||||||||| ||||||| |||||| |||||||||| ||||||||||| |||||||| |||||    
T  51942045 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctcag 51942134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 46507197 - 46507113
Alignment:
Q  273 atcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcg 357  Q
    |||||||  |||||||||||||| |||||||||||| |||| ||||||||| | | |||||| ||| ||||||||||||| ||||    
T  46507197 atcgctgccggctctgagggtcccactcaacaacagattcttgacttcctctgctccaaatctatccatcatctcaactcattcg 46507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 362
Target Start/End: Original strand, 46490048 - 46490158
Alignment:
Q  252 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 351  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||  | || |||||||||||||| ||||||||||  |  || |||| |||||| |||||||    
T  46490048 ctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcctccaatctaactccaccgatcaactcaact 46490147  T
Q  352 ccttcgtctct 362  Q
    | |||| ||||    
T  46490148 cattcgcctct 46490158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 46497368 - 46497475
Alignment:
Q  255 caagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactcct 354  Q
    |||||||| || || |||||||||  |||||| ||||| || || |||||||| |||||| |||||||||  | |||||||| | |||| ||||||||||    
T  46497368 caagttgtgctaagcatcatcgctactggctccgagggccccacacaacaacaacttctcaacttcctccaatccaaatccacctatcaactcaactcct 46497467  T
Q  355 tcgtctct 362  Q
    ||| ||||    
T  46497468 tcgcctct 46497475  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 352
Target Start/End: Original strand, 45900912 - 45901012
Alignment:
Q  252 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 351  Q
    ||||||||| ||||||| ||||| |||| |||  |||||||||| || ||||| |||||| || |||||||||  ||  |||||| ||| ||||||||||    
T  45900912 ctccaagttattctcagcatcattgctgctggtgctgagggtccaacacaacagcagcttatccacttcctccaatttgaatccaccgaccatctcaact 45901011  T
Q  352 c 352  Q
    |    
T  45901012 c 45901012  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 351
Target Start/End: Complemental strand, 16968014 - 16967863
Alignment:
Q  200 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctact 299  Q
    |||||| ||||| |||||||| ||||||||| |||| ||||||||| | || |||||||||||  | || || |||||| |||| ||||||||||| |||    
T  16968014 acatctattctccaaagaatcggacaacaacatcgtgttttcaccactctcactccaagttgtgttaagcataatcgcttttggttctgagggtcccact 16967915  T
Q  300 caacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 351  Q
    |||||||| ||| || | |||||||  | |||||||||||||||||||||||    
T  16967914 caacaacaacttttcaaattcctccaatccaaatccatcgatcatctcaact 16967863  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 369
Target Start/End: Original strand, 20143500 - 20143652
Alignment:
Q  217 aatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcga 316  Q
    |||||||||| ||| |||| ||||| ||| | || |||||| |||| |||||  | ||||||| ||| ||||| | ||| || |||||||| ||| ||||    
T  20143500 aatcagacaagaacatcgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttgtcga 20143599  T
Q  317 cttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 369  Q
    ||||||||| |||||||||| | ||||||| |||||||||  |||| ||||||    
T  20143600 cttcctccgcttcaaatccaccaatcatcttaactccttcacctcttatctcc 20143652  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 20154383 - 20154511
Alignment:
Q  195 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 294  Q
    ||||||||||| ||||  ||| |||||||||| ||| | || ||||| ||| |||| |||||||||||  ||||  ||| ||||| ||||||||| ||||    
T  20154383 gccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaaggtc 20154482  T
Q  295 ctactcaacaacagcttctcgacttcctc 323  Q
    | || |||||||||||| |||||||||||    
T  20154483 ccacacaacaacagcttgtcgacttcctc 20154511  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 369
Target Start/End: Complemental strand, 20170010 - 20169858
Alignment:
Q  217 aatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcga 316  Q
    |||||||||| |||||||| ||||||||| | || || ||| |||| |||||  | || |||  ||| ||||| ||||| ||  ||||||| ||| ||||    
T  20170010 aatcagacaaaaacgtcgtgttttcaccactatcacttcaaattgtgctcagccttattgctactggttctgaaggtcccacaaaacaacaacttgtcga 20169911  T
Q  317 cttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 369  Q
    ||||||||| |||||||||| | |||||||||| ||||||| |||| ||||||    
T  20169910 cttcctccgtttcaaatccaccaatcatctcaattccttcgcctcttatctcc 20169858  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 39548117 - 39548162
Alignment:
Q  200 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 245  Q
    |||||||||||| |||||||||||||||||| || | |||||||||    
T  39548117 acatctcttctccaaagaatcagacaacaacatcatgttttcacca 39548162  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 33097480 - 33097525
Alignment:
Q  200 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 245  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  33097480 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 33097525  T

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