View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5908_low_5 (Length: 375)
Name: NF5908_low_5
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 3432951 - 3433297
Alignment:
| Q |
19 |
tttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagttaggt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432951 |
tttccatatagaccaaaacctatcaatatttgaatggtgagagaaaaaaataggatctcttgcagctgaatagaaatctcccatgtcttcaaagttaggt |
3433050 |
T |
|
| Q |
119 |
tgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagggtttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433051 |
tgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagggtttc |
3433150 |
T |
|
| Q |
219 |
cgaggaaaagtcttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcgctatc |
318 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433151 |
cgaggaaaagtgttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcgctatc |
3433250 |
T |
|
| Q |
319 |
atcgccaggtacatagttaaagtctatgagtgttggaggttgatgat |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433251 |
atcgccaggtacatagttaaagtctatgagtgttggaggttgatgat |
3433297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 3426769 - 3427106
Alignment:
| Q |
19 |
tttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagttaggt |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||| ||||||||||||| |
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|
| T |
3426769 |
tttccatacagaccaaaacctatcaatatttgaatggtgagagaaaaaaataggatctctagcagctgcatagaaagttcccatgttttcaaagttaggt |
3426868 |
T |
|
| Q |
119 |
tgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagggtttc |
218 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||| |||||| |||||||||||| ||||| ||| ||| || |||||||||| | ||| |
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|
| T |
3426869 |
tgcgtattatcaccactccatctatgaactggtccatgtggaacattctctatggatccagcacctggatcgggttgatcaccggcacggtaagagcttc |
3426968 |
T |
|
| Q |
219 |
cgaggaaaagtcttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcgctatc |
318 |
Q |
| |
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||||||| || |||| ||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |
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| T |
3426969 |
cgaggaatagagttgaagtttttccatttgagacaagttgtctatacattatagtaaggtttgtggagattctttcattttcatcattttcatcg---tc |
3427065 |
T |
|
| Q |
319 |
atcgccaggtacatagttaaagtctatgagtgttggaggttgatgat |
365 |
Q |
| |
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| || ||||||| |||||||||||||||||||||||||||| |
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|
| T |
3427066 |
accg------tcatagtttaagtctatgagtgttggaggttgatgat |
3427106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 11897513 - 11897172
Alignment:
| Q |
19 |
tttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagttaggt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |||| ||||||| |
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| T |
11897513 |
tttccatatagaccataacctatcaatatttgaatggtgagagaaaaaaacaggatctcttgctgctgaatagaaagttcccatgttttcatggttaggt |
11897414 |
T |
|
| Q |
119 |
tgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagggtttc |
218 |
Q |
| |
|
||| || |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| | |||| || |||||||||||||||||| || |
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|
| T |
11897413 |
tgcctagtatcaccactccaattatgaactgtattatgaggaacaatctctacggatccagcacat---ttcggtacacctccagcacggtaagggtatc |
11897317 |
T |
|
| Q |
219 |
cgaggaaaagtcttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcgctatc |
318 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||| | | ||||||| || |||||||| | || |
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|
| T |
11897316 |
cgaggaaaagtcttgagttttttcctctagacacaacctgtctatacattatagtaaggtttgtgtggattatgttattttcaccatcttcatcgatgtc |
11897217 |
T |
|
| Q |
319 |
atcgccaggtacatagttaaagtctatgagtgttggaggttgatg |
363 |
Q |
| |
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||||| | ||||||| |||||||||||||||||||||||||| |
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|
| T |
11897216 |
atcgcagtgaccatagttgaagtctatgagtgttggaggttgatg |
11897172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 11912606 - 11912455
Alignment:
| Q |
19 |
tttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagttaggt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||| ||||||| |
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|
| T |
11912606 |
tttccatatagaccataacctatcaatatttgaatggtgagagaaaaaaacaggatctcttgctgctgaatagaaatttcccatgttttcatggttaggt |
11912507 |
T |
|
| Q |
119 |
tgcgtatcatcaccactccatagatgaactatattatgtggaacaatctcta |
170 |
Q |
| |
|
||| ||| ||||||||||||| ||||| | |||||||||||||| |||||| |
|
|
| T |
11912506 |
tgcctattatcaccactccatgtatgaattgtattatgtggaacattctcta |
11912455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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