View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5908_low_7 (Length: 366)
Name: NF5908_low_7
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908_low_7 |
 | |
|
| [»] scaffold0643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 41529466 - 41529826
Alignment:
| Q |
1 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529466 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
41529565 |
T |
|
| Q |
101 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529566 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaacta |
41529665 |
T |
|
| Q |
201 |
cggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529666 |
cggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagt |
41529765 |
T |
|
| Q |
301 |
catatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529766 |
catatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
41529826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 37368107 - 37367745
Alignment:
| Q |
1 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37368107 |
ccccatgaaccacttatacagaaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
37368008 |
T |
|
| Q |
101 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37368007 |
aatttcaactcaaattttccagaatcaaataaaatatgtatacacagctcctacaccagtaataaataaattctaacatatttaacccaataatcaacta |
37367908 |
T |
|
| Q |
201 |
cggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
37367907 |
cggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagcaacaacgacaaaatttatactactaacagcccaaaaacagatt |
37367808 |
T |
|
| Q |
301 |
cat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaattg |
362 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37367807 |
catcatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaattg |
37367745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 5558844 - 5559197
Alignment:
| Q |
1 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558844 |
ccccatgaaccacttatacagcaggttagtccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
5558943 |
T |
|
| Q |
101 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaacta |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558944 |
aatttcaactcgaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaacta |
5559043 |
T |
|
| Q |
201 |
cggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagt |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5559044 |
cggaagcttttggaacaacttatgg-------cttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaaacagagt |
5559136 |
T |
|
| Q |
301 |
catatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5559137 |
catatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
5559197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 34150330 - 34150117
Alignment:
| Q |
14 |
ttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactca |
112 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||| |||||||| ||||| |||||| |||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
34150330 |
ttatacagcagattaatccataacttagtaatttaagtcaaaattcgcaaaaaagcttaactgacagcttatgatctctagaaaattcaatttcaattca |
34150231 |
T |
|
| Q |
113 |
aattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaactacggaagcttttg |
212 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||| ||| | | |||| ||| |||||||||| |||||| |||||||||| | || |||||||| |
|
|
| T |
34150230 |
aattttccagaaacaaagaaaacatgtataaacagctcctaaatcacccatacagatattctaacatgtttaactcaataatcaattctggtagcttttg |
34150131 |
T |
|
| Q |
213 |
gaacaacttatggc |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34150130 |
gaacaacttatggc |
34150117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 32 - 361
Target Start/End: Complemental strand, 25637566 - 25637236
Alignment:
| Q |
32 |
cacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaag |
130 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| |||||| ||||| || ||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
25637566 |
cacaacttagtcatttaaggcatt-ttctcaaaacagcttaactgacaacttatacccactaaacaattcaatttctgttcaaattttccagaagcaaac |
25637468 |
T |
|
| Q |
131 |
aaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggctttt |
230 |
Q |
| |
|
| | ||||||| |||||| ||| || | || || |||||||||| || | |||| ||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
25637467 |
catacatgtatatacagctcctaacccatccctacagcaattctaacacgttgattccaaaaatcagttacgaaagcttttgaaacaacttatggctttt |
25637368 |
T |
|
| Q |
231 |
aacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaa-acagagtcatat-agaatcccaaagtcagtaacaac |
328 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||||| ||||||| || | ||||| |||||| || ||||| | |
|
|
| T |
25637367 |
agcttctagcttttcattccaaacagcaacaacaacaacattgctactactaagagcccaaaatacagagttatctcagaat-ccaaaggcaataacagc |
25637269 |
T |
|
| Q |
329 |
ttatacatctaatcaatcaacataacttgaatt |
361 |
Q |
| |
|
|||| | | |||| |||||||||||||| |||| |
|
|
| T |
25637268 |
ttatgcttataattaatcaacataacttaaatt |
25637236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 2696223 - 2695960
Alignment:
| Q |
1 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2696223 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
2696124 |
T |
|
| Q |
101 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| | |
|
|
| T |
2696123 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtcataaagaaattctaacatatttaactcaa--------aa |
2696032 |
T |
|
| Q |
201 |
cggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaaaatt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2696031 |
cggaagcttttggaacaacttatggcttttaacttctagcttttcattccaaacagcaacaacaacaaaatt |
2695960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 64 - 361
Target Start/End: Complemental strand, 31330988 - 31330688
Alignment:
| Q |
64 |
aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtca |
162 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||| |||| |||||| || ||| | | | |
|
|
| T |
31330988 |
aacagcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacacatctcctaagacactta |
31330889 |
T |
|
| Q |
163 |
taaagaaattctaacatattt-aacccaataatcaactacggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaaca |
261 |
Q |
| |
|
|| ||||||||||| | ||| ||| |||||||||| | | |||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
31330888 |
tattgaaattctaacttgttttaactcaataatcaattctgatagcttttggaacaacttatgacttttaactgctagcttttcattccgaacagcaaca |
31330789 |
T |
|
| Q |
262 |
acaacaaaatttatactactaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaat |
360 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||| | ||||| ||||| | ||||| ||||||| |||||| |||||||||||||| ||| |
|
|
| T |
31330788 |
acagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaat |
31330689 |
T |
|
| Q |
361 |
t |
361 |
Q |
| |
|
| |
|
|
| T |
31330688 |
t |
31330688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 64 - 361
Target Start/End: Complemental strand, 31337709 - 31337409
Alignment:
| Q |
64 |
aacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtca |
162 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||| |||| |||||| || ||| | | | |
|
|
| T |
31337709 |
aacagcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacacatctcctaagacactta |
31337610 |
T |
|
| Q |
163 |
taaagaaattctaacatattt-aacccaataatcaactacggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaaca |
261 |
Q |
| |
|
|| ||||||||||| | ||| ||| |||||||||| | | |||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
31337609 |
tattgaaattctaacttgttttaactcaataatcaattctgatagcttttggaacaacttatgacttttaactgctagcttttcattccgaacagcaaca |
31337510 |
T |
|
| Q |
262 |
acaacaaaatttatactactaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaat |
360 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||| | ||||| ||||| | ||||| ||||||| |||||| |||||||||||||| ||| |
|
|
| T |
31337509 |
acagcaaaattgatactactaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaat |
31337410 |
T |
|
| Q |
361 |
t |
361 |
Q |
| |
|
| |
|
|
| T |
31337409 |
t |
31337409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 31315985 - 31316241
Alignment:
| Q |
11 |
cacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaac |
109 |
Q |
| |
|
||||| ||||||| |||||| ||| |||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
31315985 |
cacttttacagcaaattaatcaacagcttagtcatttaagacaaaattcccataacagcttaactgacagtttatgacctctaaacaattccatttcaat |
31316084 |
T |
|
| Q |
110 |
tcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaac-atatttaacccaataatcaactacggaagct |
208 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||| || | || | ||| ||||| ||||| | |||| ||| ||||| | ||||| |
|
|
| T |
31316085 |
tcaaattttccagaatcaaataaaacatgtatacacagctcctaatccatttctacaccaatcctaacaatattaattccaaaaattaactatgaaagct |
31316184 |
T |
|
| Q |
209 |
tttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaa |
265 |
Q |
| |
|
|||||||||||||||| |||||| | | ||||||||| |||||||||| |||||||| |
|
|
| T |
31316185 |
tttggaacaacttatgacttttagcctctagcttttctttccaaacagcaacaacaa |
31316241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 2694871 - 2694772
Alignment:
| Q |
263 |
caacaaaatttatactactaacagcccaaaaacagagtcatat-agaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2694871 |
caacaaaatttatactactaacagcccaaaaacagagttatcgcagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
2694772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 2742550 - 2742412
Alignment:
| Q |
7 |
gaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaattt |
105 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| || | | ||||||| |||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
2742550 |
gaaccacttatacagcagcttaaaccacaacttagtcatttaagacattttgctcaaaacaacttaactgacagcttatgccctctaaacaattcaattt |
2742451 |
T |
|
| Q |
106 |
caactcaaattttccagaatcaaagaaaatatgtataca |
144 |
Q |
| |
|
| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
2742450 |
ctattctaattttccagaatcaaagaaaacatgtataca |
2742412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 33295365 - 33295098
Alignment:
| Q |
1 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33295365 |
ccccatgaaccacttatacagcaggttaatcaacaacttagttatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattc |
33295266 |
T |
|
| Q |
101 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||||| |||||||||| || |
|
|
| T |
33295265 |
aatttcaactcaaattttccagaatcaaagaaaatatgtatacacagctcctacaccagtcttacagaaattctaacatatttaactcaataatcaaata |
33295166 |
T |
|
| Q |
201 |
cggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaa |
268 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||||||| ||||||| ||||||||||| |
|
|
| T |
33295165 |
ttgaagcttttggaacaacttatgacttttaggttctagcttttcatttcaaacagcaacaacaacaa |
33295098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 8520529 - 8520818
Alignment:
| Q |
1 |
ccccatgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaatt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8520529 |
ccccatgaaccacttatacagcaggttaatccacaacatagtcatttaaggcaaaatttgcaaaacagcttaactgacagcttatgacctctagacaatt |
8520628 |
T |
|
| Q |
100 |
caatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| || ||||||||||||||||| ||| |||||||||| | |
|
|
| T |
8520629 |
aaatttcaactcaaattttccagaatcaaagaaaatatgtacacacatctcctacaccagtcttacagaaattctaacatattaaactcaataatcaaat |
8520728 |
T |
|
| Q |
200 |
acggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagccc |
289 |
Q |
| |
|
| ||||| ||| |||||||||| || |||||| ||| |||||||||||| ||||||| ||||||||||| | | || ||||||||||||| |
|
|
| T |
8520729 |
atggaagttttcggaacaacttttgacttttagcttctagcttttcatttcaaacagcaacaacaacaatactaatgctactaacagccc |
8520818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 29933778 - 29933640
Alignment:
| Q |
7 |
gaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttact-gacagcttatgacctctagacaattcaattt |
105 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||| | | |||||||||||| | ||||||||||| |||||| |||||||||||| |
|
|
| T |
29933778 |
gaaccacttatacagcagcttaaaccacaacttagtcatttaaggcattttgctcaaaacagcttaattgacagcttatgccctctaaacaattcaattt |
29933679 |
T |
|
| Q |
106 |
caactcaaattttccagaatcaaagaaaatatgtataca |
144 |
Q |
| |
|
| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
29933678 |
ctattctaattttccagaatcaaagaaaacatgtataca |
29933640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 5248982 - 5248828
Alignment:
| Q |
72 |
actgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaat |
171 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| | | ||| ||||||||| ||| ||| |||| |||||| |||||| ||| | || ||| || |
|
|
| T |
5248982 |
actgacagcttatgccctctaaacaattcaatttttattaaaaatttccagaagcaacccaaacatgtttacacaccttctaaaccaattgtacagagat |
5248883 |
T |
|
| Q |
172 |
tctaacatatttaacccaataatcaactacggaagcttttggaacaacttatggc |
226 |
Q |
| |
|
|||||||| |||||| ||||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
5248882 |
tctaacatgtttaactcaataatcaactatggtagctttaggaacaacttatggc |
5248828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 17054380 - 17054158
Alignment:
| Q |
14 |
ttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17054380 |
ttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaa |
17054281 |
T |
|
| Q |
114 |
attttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaactacggaagcttttgg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17054280 |
attttccagaatcaaagaaaatatgtatacacagttcctacaccagtcataaagaaattataacatatttaacccaataatcaactgcggaagcttttgg |
17054181 |
T |
|
| Q |
214 |
aacaacttatggcttttaacttt |
236 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17054180 |
aacaacttatggcttttaacttt |
17054158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 18112432 - 18112691
Alignment:
| Q |
11 |
cacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaac |
109 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
18112432 |
cacttttacagcaaattaatcaacaacttagtcatttaagacaaaattcccataacagcttaactgacagcttatgacctctaaacaattccatttcaat |
18112531 |
T |
|
| Q |
110 |
tcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaac-atatttaacccaataatcaactacggaagct |
208 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||| || | || | ||| ||||| ||||| | |||| ||||||||| | ||||| |
|
|
| T |
18112532 |
tcaaattttccagaatcaaataaaacatgtatacacagctcctaatccatttctacaccaatcctaacaatattaattccaaaaatcaactatgaaagct |
18112631 |
T |
|
| Q |
209 |
tttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaa |
268 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||| ||||||||| ||||||||||| |
|
|
| T |
18112632 |
tttggaacaacttatgacttttagactctagcttttctttccaaacaacaacaacaacaa |
18112691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 19358097 - 19357999
Alignment:
| Q |
263 |
caacaaaatttatactactaacagcccaaaaacagagtcatatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19358097 |
caacaaaatttatactactaacagcccaaaaacagagtcatatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
19357999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 7480 - 7260
Alignment:
| Q |
14 |
ttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaa |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7480 |
ttatacagcagattaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactaacagcttatgacctctagacaattcaatttcaactcaa |
7381 |
T |
|
| Q |
114 |
attttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaactacggaagcttttgg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7380 |
attttccagaatcaaagaaaatatgtatacacagttcctacaccaatc--aaagaaattctaacatatttaacccaataatcaactgcggaagcttttgg |
7283 |
T |
|
| Q |
214 |
aacaacttatggcttttaacttt |
236 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7282 |
aacaacttatggcttttaacttt |
7260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 9142747 - 9142957
Alignment:
| Q |
26 |
ttaatccacaacttagtcatttaaggcaaaattcccaaaacagcttactgacagcttatgacctctagacaattcaatttcaactcaaattttccagaat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
9142747 |
ttaatccacaacttagtcatttaaggcaaaattcccaaaacaactcactgacagcttatgacctctaggcaattcaatttcaactcaaattttccaaaat |
9142846 |
T |
|
| Q |
126 |
caaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaactacggaagcttttggaacaacttatgg |
225 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9142847 |
caaagaaaatatgtatacacagttcctacaccagtcataaagaaattctaacatatttaacctaataatcaaccgcggaagcttttggaacaacttatgg |
9142946 |
T |
|
| Q |
226 |
cttttaacttt |
236 |
Q |
| |
|
||||||||||| |
|
|
| T |
9142947 |
cttttaacttt |
9142957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 4853589 - 4853729
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaat |
103 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||||||||||||||| | | ||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
4853589 |
atgaatcacttatacagcagtgtaaaccacaacttagtcatttaaggcattttacttaaaacagcttaactgacagcttatgccctctaaacaattcaat |
4853688 |
T |
|
| Q |
104 |
ttcaactcaaattttccagaatcaaagaaaatatgtataca |
144 |
Q |
| |
|
||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
4853689 |
ttctattctaattttccagaatcaaagaaaacatgtataca |
4853729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 15028326 - 15028261
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagct |
70 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15028326 |
atgaatcacttatacagcagcttaatccacaacttagtcatttaaggcaaaattcccaaaacagct |
15028261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 5600603 - 5600724
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaa-tccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaa |
102 |
Q |
| |
|
|||| ||||||||||||||| |||| | |||||||||||| ||||||||| ||| |||||||||||| |||||| ||||| |||||| ||||||||| |
|
|
| T |
5600603 |
atgatccacttatacagcagtttaaattcacaacttagtcttttaaggcatttttctcaaaacagcttaactgacaagttatgccctctaaacaattcaa |
5600702 |
T |
|
| Q |
103 |
tttcaactcaaattttccagaa |
124 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
5600703 |
tttctgctcaaattttccagaa |
5600724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 6734346 - 6734280
Alignment:
| Q |
202 |
ggaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaa |
268 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
6734346 |
ggaagcttttggaacaacttatgacttttagcttctagcttttcattccaaacaacaacaacaacaa |
6734280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 6734505 - 6734429
Alignment:
| Q |
32 |
cacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttca |
107 |
Q |
| |
|
|||||||| ||||||||||||| | | |||||||||||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
6734505 |
cacaactttgtcatttaaggcattttgctcaaaacagcttaactgacaacttatgacctctaaacaattcaatttca |
6734429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 28023212 - 28023262
Alignment:
| Q |
94 |
acaattcaatttcaactcaaattttccagaatcaaagaaaatatgtataca |
144 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
28023212 |
acaattcaatttctattctaattttccagaatcaaagaaaacatgtataca |
28023262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 4342331 - 4342690
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaa-tccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaa |
102 |
Q |
| |
|
|||||||||||| | ||||| |||| | |||||||||||||||||||||| | | ||||||||||| |||||| ||||| |||||| ||||||||| |
|
|
| T |
4342331 |
atgaaccacttacatagcagtttaaattcacaacttagtcatttaaggcattttgcttaaaacagcttaactgacaacttataccctctaaacaattcaa |
4342430 |
T |
|
| Q |
103 |
tttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaactacg |
202 |
Q |
| |
|
|||| ||||||||||||||| |||| | | |||||||||||||| ||| || | || || |||||||||| || | |||| ||||| |||| |
|
|
| T |
4342431 |
tttctgttcaaattttccagaagcaaaccatacatgtatacacagctcctaacccatccctacagcaattctaacacgttcattccaaaaatcagttacg |
4342530 |
T |
|
| Q |
203 |
gaagcttttggaacaacttatggcttttaacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagcccaaaa-acagagtc |
301 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
4342531 |
aaagcttttgaaacaacttatggcttttagcttctagcttttcattccaaacagcaacaacaacaacattgctactactaacagcccaaaatacagagtt |
4342630 |
T |
|
| Q |
302 |
atat-agaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatt |
361 |
Q |
| |
|
|| | ||||| |||||| || ||||| ||||| | | |||| |||||||||||||| |||| |
|
|
| T |
4342631 |
atctcagaat-ccaaaggcaataacagcttatgcttataattaatcaacataacttaaatt |
4342690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 34455580 - 34455444
Alignment:
| Q |
11 |
cacttatacagcaggttaatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaac |
109 |
Q |
| |
|
||||| ||||||| || ||| ||| |||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
34455580 |
cacttttacagcaaattgatcaacagcttagtcatttaagacaaaatttccataacagcttaactgacagcttatgacctctaaacaattccatttcaat |
34455481 |
T |
|
| Q |
110 |
tcaaattttccagaatcaaagaaaatatgtatacaca |
146 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||| |
|
|
| T |
34455480 |
tcaaattttccagaatcaaactaaacatatatacaca |
34455444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 42784963 - 42784842
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaa-tccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaa |
102 |
Q |
| |
|
|||| ||||||||||||||| |||| | |||||||||||| ||||||||| ||| |||||||||||| |||||| ||||| |||||| ||||||||| |
|
|
| T |
42784963 |
atgatccacttatacagcagtttaaattcacaacttagtcttttaaggcatttttctcaaaacagcttaactgacaatttatgccctctaaacaattcaa |
42784864 |
T |
|
| Q |
103 |
tttcaactcaaattttccagaa |
124 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
42784863 |
tttctgctcaaattttccagaa |
42784842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 48478962 - 48479083
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaa-tccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaa |
102 |
Q |
| |
|
|||| ||||||||||||||| |||| | |||||||||||| ||||||||| ||| |||||||||||| |||||| ||||| |||||| ||||||||| |
|
|
| T |
48478962 |
atgatccacttatacagcagtttaaattcacaacttagtcttttaaggcatttttctcaaaacagcttaactgacaagttatgccctctaaacaattcaa |
48479061 |
T |
|
| Q |
103 |
tttcaactcaaattttccagaa |
124 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
48479062 |
tttctgctcaaattttccagaa |
48479083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 270
Target Start/End: Complemental strand, 3077812 - 3077569
Alignment:
| Q |
28 |
aatccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaatttcaactcaaattttccagaatc |
126 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||||||||| || ||||||||| |||||| || |||||||||| ||||||||||||||| | |
|
|
| T |
3077812 |
aatccacaacttaatcatttaaggcatttttctaaaaacagcttaactaacagcttataccctctaaaccattcaatttctgttcaaattttccagaagc |
3077713 |
T |
|
| Q |
127 |
aaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaacccaataatcaactacggaagctttt-ggaacaacttatgg |
225 |
Q |
| |
|
||| ||| |||| |||||| | ||| | | | ||| |||||||| || | ||| ||||| |||||| || | ||||||| || ||||||||||| |
|
|
| T |
3077712 |
aaaccaaacatgtttacacaaatccta-atcacttataccgaaattcttacttgtttcacccattaatcacttatgatagctttttgggacaacttatgg |
3077614 |
T |
|
| Q |
226 |
cttttaacttttagcttttcattccaaacagaaacaacaacaaaa |
270 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
3077613 |
cttttaacttctagcttctcattccaaacagcaacaacagcaaaa |
3077569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 44193102 - 44192808
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaa-tccacaacttagtcatttaaggcaaaattcccaaaacagctta-ctgacagcttatgacctctagacaattcaa |
102 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||||||||| ||| |||||||||||| || ||| ||||||||||||| ||| ||||| |
|
|
| T |
44193102 |
atgaaccacttatacagcattttaaattcacaacttagtcatttaaggcatttttctcaaaacagcttaactaacaacttatgacctctaaacagttcaa |
44193003 |
T |
|
| Q |
103 |
tttcaactcaaattttccagaatcaaagaaaatatgtatacacagcttctacaccggtcataaagaaattctaacatatttaac--ccaataatcaacta |
200 |
Q |
| |
|
|||||| |||||||||||||| ||||| || | ||||||| |||| | ||| || | || || ||| || |||| ||||| | || |||| | || |
|
|
| T |
44193002 |
tttcaattcaaattttccagagtcaaataatacatgtataaacagatcctaacccatttttacagcaatccttacat-gttaacttcaaaaaatcgatta |
44192904 |
T |
|
| Q |
201 |
cggaagcttttggaacaacttatggcttt-------taacttttagcttttcattccaaacagaaacaacaacaaaatttatactactaacagccc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||| | | || ||||||| ||||| |
|
|
| T |
44192903 |
tggaagcttttggaacaacttatggcttttagcttctagcttctagcttttcattccaaacagcaacaacaacaatactaatgctactaaaagccc |
44192808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 14113764 - 14113696
Alignment:
| Q |
76 |
acagcttatgacctctagacaattcaatttcaactcaaattttccagaatcaaagaaaatatgtataca |
144 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| | ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
14113764 |
acagcttatgccctctaaacaattcaatttctattcaaattttccagaatcaaagcaaacatgtataca |
14113696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 14113824 - 14113776
Alignment:
| Q |
5 |
atgaaccacttatacagcaggttaatccacaacttagtcatttaaggca |
53 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||||||||||| ||| |
|
|
| T |
14113824 |
atgaatcacttatacagcagcgtaaaccacaacttagtcatttaaagca |
14113776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University