View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5908_low_9 (Length: 340)
Name: NF5908_low_9
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 7429027 - 7429335
Alignment:
| Q |
17 |
tgcactcattactaaccaactttccaacatcgtatattcttcattactatgcttgcttttttctttcttctcttgtcatgaaattaatgacattgaactc |
116 |
Q |
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| T |
7429027 |
tgcactcattactaaccaactttccaacatcgtatattcttcattattacgcttgcttttttctttcttctcttgtcatgaagttaataacattgaactc |
7429126 |
T |
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| Q |
117 |
acaaaactcccattattcccaatattattagagaaaaatacttagagggagtaaagatgataaggaagtttaggctccaaaacaacttctaatggtattt |
216 |
Q |
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| T |
7429127 |
acaaaaatcccattattcccaatattattagagaaaaatacttagaggcaataaagatgatacggaagtttaggctccaaaacaacttctaatggtattt |
7429226 |
T |
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| Q |
217 |
tcttaggtgtagtgagcccaaaaatctcctccatatttaaatcctcttttttcatatcattaggtaatctccaattaaatccatgcaacaaattagccaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7429227 |
tcttaggtgtagtgagcccaaaaatctcctccatatttaaatcctcttttttcatatcattaggtaatctccaattaaatccatgcaacaagttagccaa |
7429326 |
T |
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| Q |
317 |
acttgattg |
325 |
Q |
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||||||||| |
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| T |
7429327 |
acttgattg |
7429335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 87 - 326
Target Start/End: Original strand, 7422691 - 7422930
Alignment:
| Q |
87 |
tcttgtcatgaaattaatgacattgaactcacaaaactcccattattcccaatattattagagaaaaatacttagagggagtaaagatgataaggaagtt |
186 |
Q |
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||||||||| || |||||||||||||||||||| || |||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
7422691 |
tcttgtcattaagttaatgacattgaactcacacaaatcccattattcccaatcttattaaagaaaaattcttagagggagtaaagatgatgaggaagtc |
7422790 |
T |
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| Q |
187 |
taggctccaaaacaacttctaatggtattttcttaggtgtagtgagcccaaaaatctcctccatatttaaatcctcttttttcatatcattaggtaatct |
286 |
Q |
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||||||||| ||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
7422791 |
taggctccacaacaacttctagtggtattttcctaggagtagtcagcccaaaaatctcctccatattcaaatcctctttcttcatatcattaggtaatct |
7422890 |
T |
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| Q |
287 |
ccaattaaatccatgcaacaaattagccaaacttgattgt |
326 |
Q |
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| T |
7422891 |
ccaattaaatccatgcaacaaattagccaaacttgattgt |
7422930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 151 - 321
Target Start/End: Original strand, 7415096 - 7415266
Alignment:
| Q |
151 |
aaaatacttagagggagtaaagatgataaggaagtttaggctccaaaacaacttctaatggtattttcttaggtgtagtgagcccaaaaatctcctccat |
250 |
Q |
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|||||||| | |||||||||||||||| || |||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7415096 |
aaaatactcaaagggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccat |
7415195 |
T |
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| Q |
251 |
atttaaatcctcttttttcatatcattaggtaatctccaattaaatccatgcaacaaattagccaaacttg |
321 |
Q |
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||| |||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7415196 |
attcaaatcctcctttttcacattattaggtaatgtccaattaaatccatgcaacaaattagccaaacttg |
7415266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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