View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5909-Insertion-1 (Length: 910)
Name: NF5909-Insertion-1
Description: NF5909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5909-Insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 37593001 - 37592598
Alignment:
| Q |
9 |
cttccattgttgcacttttcggatttaccgacaacattttgtagaaatttgatccattcttggtttcttctattagctttgttgctctacatgaaattgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37593001 |
cttccattgttgcacttttcggatttaccgacaacattttgtagaaatttgatccattcttggtttcttccactagctttgttgctctacatgaaattgt |
37592902 |
T |
|
| Q |
109 |
tgcaaagtgaacgtgagaaggtcttagctgtttactaaggtgatgaaattgctttgaatttgaaatgcttaggtttgaggttaaggatgaagcattcata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37592901 |
tgcaaagtgaacgtgagaaggtcttagctgtttactaaggtgatgaaattgctttgaatttgaaatgcttaggtttgaggttaaggatgaagcattcata |
37592802 |
T |
|
| Q |
209 |
ttgctataattaattggggttaatttatctttggtctatgaaaatcaatcaatgagagcgtggaaatgtagatggttcactctactttactacttagaca |
308 |
Q |
| |
|
||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37592801 |
ttg-tctaattaatt-gggttaatttatctttggtctatgaaaatcaatcaatgagagcgtggaaatgtagatggttcactctacttaactacttagaca |
37592704 |
T |
|
| Q |
309 |
tatttatatgcgtga--tcgctcttaatttaattgagtcgtgataccagctattttattttaatttatgttagcagccggaatggactttgaaatttttt |
406 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37592703 |
tatttatatgcgtgacttcgctcttaatttaattgagtcgtgataccagctattttattttaatttatgttagcagccggaatggactttgaaatttttt |
37592604 |
T |
|
| Q |
407 |
atcaac |
412 |
Q |
| |
|
|||||| |
|
|
| T |
37592603 |
atcaac |
37592598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 793 - 894
Target Start/End: Complemental strand, 37590689 - 37590588
Alignment:
| Q |
793 |
ccccgattgaagtagtcagtcacttgctttgaatcaacttcaaaatcaacatttggcagttgtaaatcacttatccaccgcatagcatgatacaaaccaa |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37590689 |
ccccgattgaagtagtcagtcacttgctttgaatcaacttcaaaatcaacatttggcagttataaatcacttatccaccgcatagcatgatacaaaccaa |
37590590 |
T |
|
| Q |
893 |
ga |
894 |
Q |
| |
|
|| |
|
|
| T |
37590589 |
ga |
37590588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 656 - 752
Target Start/End: Complemental strand, 37590785 - 37590689
Alignment:
| Q |
656 |
ggattgctaacttagaccaacctaacacattaattttgcctccttataaactcagcccgagagtttgttaattgcaaggaacaaaattgtatattgc |
752 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37590785 |
ggattgctaacttagaccaacctaacacattaattttgcctccttataaactcagcccgagagtttgttaattgcaaggaacaaaattgtatattgc |
37590689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 457 - 573
Target Start/End: Complemental strand, 37592553 - 37592444
Alignment:
| Q |
457 |
ttttacattatgtgatgaattattcaaagttgacgcattctgtgtacaacatattcattgtatcatgattgatatttaattagaatggagatcaaacggt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37592553 |
ttttacattatgtgatgaattattcaaagttgacgcattctgtgtacaacatattcattgtatc-------atatttaattagaatggagatcaaacggt |
37592461 |
T |
|
| Q |
557 |
ttaatttgttgccctcg |
573 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
37592460 |
ttaatctgttgccctcg |
37592444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 643
Target Start/End: Complemental strand, 37592418 - 37592378
Alignment:
| Q |
603 |
tgatttgaaaatatatcttgaattttcaatttaactgattg |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37592418 |
tgatttgaaaatatatcttgaattttcaatttaaatgattg |
37592378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 733 - 894
Target Start/End: Complemental strand, 30148016 - 30147857
Alignment:
| Q |
733 |
ggaacaaaattgtatattgctatccataacgactccagatttggtgatatcttcattgccccccgattgaagtagtcagtcacttgctttgaatcaactt |
832 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||| ||| |||||||||||| ||||||| |||| |||||||||| |||| |||| |||||||||| |
|
|
| T |
30148016 |
ggaacaaaactgtatattgctattcataatagctccaaattcggtgatatcttcgttgcccc--gattaaagtagtcagccactcgcttcgaatcaactt |
30147919 |
T |
|
| Q |
833 |
caaaatcaacatttggcagttgtaaatcacttatccaccgcatagcatgatacaaaccaaga |
894 |
Q |
| |
|
||||||| |||||||| || |||| ||| | | ||||| ||||||||||||||| |||||| |
|
|
| T |
30147918 |
caaaatccacatttggaagccgtaattcattaacccacctcatagcatgatacaatccaaga |
30147857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 733 - 894
Target Start/End: Complemental strand, 20681080 - 20680921
Alignment:
| Q |
733 |
ggaacaaaattgtatattgctatccataacgactccagatttggtgatatcttcattgccccccgattgaagtagtcagtcacttgctttgaatcaactt |
832 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| |||||||||| | || || ||||| |||||||||| |||| |||| || ||||||| |
|
|
| T |
20681080 |
ggaacaaaattgtatattgctatccataatagcttcagattcggtgatatctccg--gcgcctcgattaaagtagtcagccactcgcttcgagtcaactt |
20680983 |
T |
|
| Q |
833 |
caaaatcaacatttggcagttgtaaatcacttatccaccgcatagcatgatacaaaccaaga |
894 |
Q |
| |
|
||||||| ||||||| || |||| ||| | | ||||||||||||||||||||| |||||| |
|
|
| T |
20680982 |
caaaatccacatttgatagccgtaattcattaacccaccgcatagcatgatacaatccaaga |
20680921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 736 - 893
Target Start/End: Complemental strand, 16332841 - 16332686
Alignment:
| Q |
736 |
acaaaattgtatattgctatccataacgactccagatttggtgatatcttcattgccccccgattgaagtagtcagtcacttgctttgaatcaacttcaa |
835 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||| ||| |||||||||| | || || ||||| |||||||||| |||| |||| || |||||||||| |
|
|
| T |
16332841 |
acaaaattgtatattgttgtccataatagctccaaattcggtgatatctccggtg--cctcgattaaagtagtcagccactcgcttcgagtcaacttcaa |
16332744 |
T |
|
| Q |
836 |
aatcaacatttggcagttgtaaatcacttatccaccgcatagcatgatacaaaccaag |
893 |
Q |
| |
|
|||| ||||||||||| ||||| ||| | | ||||||||||||||||||||| ||||| |
|
|
| T |
16332743 |
aatccacatttggcagctgtaattcattaacccaccgcatagcatgatacaatccaag |
16332686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 814 - 892
Target Start/End: Original strand, 14945194 - 14945272
Alignment:
| Q |
814 |
acttgctttgaatcaacttcaaaatcaacatttggcagttgtaaatcacttatccaccgcatagcatgatacaaaccaa |
892 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| |||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
14945194 |
acttgtttcgaatcaacttcaaaatcaacatttggtagtcgtaaatcatgtatccactgaatagcatgatacaaaccaa |
14945272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University