View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5909-Insertion-2 (Length: 880)

Name: NF5909-Insertion-2
Description: NF5909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5909-Insertion-2
NF5909-Insertion-2
[»] chr2 (6 HSPs)
chr2 (294-787)||(35590378-35590875)
chr2 (9-310)||(35590885-35591186)
chr2 (813-878)||(35590283-35590352)
chr2 (694-749)||(41300521-41300576)
chr2 (694-725)||(45130944-45130975)
chr2 (816-862)||(37738058-37738104)
[»] chr4 (6 HSPs)
chr4 (696-768)||(21204750-21204822)
chr4 (700-768)||(27269856-27269924)
chr4 (694-768)||(41995849-41995923)
chr4 (705-769)||(48337125-48337189)
chr4 (698-748)||(33435967-33436017)
chr4 (816-878)||(30972361-30972427)
[»] chr8 (1 HSPs)
chr8 (694-768)||(21524007-21524081)
[»] chr5 (1 HSPs)
chr5 (694-768)||(39840084-39840158)
[»] chr7 (4 HSPs)
chr7 (698-787)||(27076729-27076818)
chr7 (698-787)||(27201483-27201572)
chr7 (691-726)||(29374549-29374584)
chr7 (694-725)||(43026160-43026191)
[»] scaffold0204 (1 HSPs)
scaffold0204 (705-769)||(24647-24711)
[»] chr6 (2 HSPs)
chr6 (694-726)||(14215867-14215899)
chr6 (691-725)||(5673382-5673416)
[»] chr1 (1 HSPs)
chr1 (692-725)||(30428455-30428488)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-170; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 294 - 787
Target Start/End: Complemental strand, 35590875 - 35590378
Alignment:
Q  294 aaaaagttgtacgtggttcaatgaaattatgcattggttggcgattagattcccaacttcctacttaccacatggccctttcttctaaacaaacaaacct 393  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35590875 aaaaagttgtatgtggttcaatgaaattatgcattagttggcgattagattcccaacttcctacttaccacatggccctttcttctaaacaaacaaacct 35590776  T
Q  394 gaaccagtacttttattagttttataatcacttaaaagagannnnnnnnnnnnaatatggaacatcttgataaatgctctaccgtggataatacttnnnn 493  Q
    ||||||||||||||||||||||||||||||||||||| |||            |||||||||||||||||||||||||||||||||||||||||||        
T  35590775 gaaccagtacttttattagttttataatcacttaaaacagaatatatttttttaatatggaacatcttgataaatgctctaccgtggataatacttaaaa 35590676  T
Q  494 nnntgtttaaaagtctaactacgttgtagtcgtctcttgatagtaaatgttgatagta--cttattatttttgacgattgagatagtgatttaatggata 591  Q
       |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  || |||||||| ||||||||||||||||||||||||||||    
T  35590675 aaatgtttaaaagtctaactacgttgtagtcatctcttgatagtaaatgttgatagtatactcattatttt-gacgattgagatagtgatttaatggata 35590577  T
Q  592 ccaatttgattgaaataacggaaagtgattatgtaattcgtattgaaccaacaataatcaaatcatcgtgttaggcttttagtagtaa---nnnnnnnnn 688  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||                
T  35590576 ccaatttgatcgaaataatggaaaatgattatgtaattcgtattgaaccaacaataattaaatcaccgtgttaggcttttagcagtaaattttttttttt 35590477  T
Q  689 nnaaaaggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtttgcaaatatttacaaggg 787  Q
      || |||||||||||||||||||||||||||||||||||||  ||||| | |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  35590476 tgaagaggctaaaatgaattatattaccacatcaaaagattcaaccttgcacaaggtatgccagagagaaacaccagagtctgcaaatatttacaaggg 35590378  T

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Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 35591186 - 35590885
Alignment:
Q  9 cagttagaggggttttcttcacttttctatagcttgaattttaattttgagtattaaaatattaactataaccgggagcagttatttggcttttgttttg 108  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35591186 cagttagaggggtcttcttcacttttctatagcttgaattttaattttgagtattaaaatattaactataaccgggagtagttatttggcttttgttttg 35591087  T
Q  109 tggatctatcatgcaatatatgtatgtattgatgtattaatcacctctgtatgtgtatcagaaatttgaaatcgccatgggagcataaaataatatgagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35591086 tggatctatcatgcaatatatgtatgtattgatgtattaatcacctctgtatgtgtatcagaaatttgaaatcgccatgggagcataaaataatatgagg 35590987  T
Q  209 tgaatatatttaagtacatttgatcgatgcattttccctttacgagaaaaaggtataattcgatgcctttcatatttatagaaataaaaagttgtacgtg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35590986 tgaatatatttaagtacatttgatcgatgcattttccctttacgagaaaaaggtataattcgatgcctttcatatttatagaaataaaaagttgtatgtg 35590887  T
Q  309 gt 310  Q
    ||    
T  35590886 gt 35590885  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 813 - 878
Target Start/End: Complemental strand, 35590352 - 35590283
Alignment:
Q  813 gccaataactattagcctatgcccaaaatagagaagggactatgcc----accatgatagttgaagggaa 878  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||    ||||||||||||||||||||    
T  35590352 gccattaactattagcctatgcccaaaatagagaaggggctaagccaccaaccatgatagttgaagggaa 35590283  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 749
Target Start/End: Original strand, 41300521 - 41300576
Alignment:
Q  694 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgt 749  Q
    ||||||||||||||||||||||||||||||||||| |||||| | | |||||||||    
T  41300521 aggctaaaatgaattatattaccacatcaaaagatcctccctagcacaaggtatgt 41300576  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 725
Target Start/End: Original strand, 45130944 - 45130975
Alignment:
Q  694 aggctaaaatgaattatattaccacatcaaaa 725  Q
    ||||||||||||||||||||||||||||||||    
T  45130944 aggctaaaatgaattatattaccacatcaaaa 45130975  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 816 - 862
Target Start/End: Original strand, 37738058 - 37738104
Alignment:
Q  816 aataactattagcctatgcccaaaatagagaagggactatgccacca 862  Q
    |||||||||||||||||||||||||| | ||| |||||| |||||||    
T  37738058 aataactattagcctatgcccaaaatggtgaacggactaagccacca 37738104  T

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Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 696 - 768
Target Start/End: Original strand, 21204750 - 21204822
Alignment:
Q  696 gctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 768  Q
    ||||||||||| |||||||||||||||||| || |||||| | | |||||||||||||||||||||| |||||    
T  21204750 gctaaaatgaaatatattaccacatcaaaaaatcctccctagcacaaggtatgtcagagagaaacactagagt 21204822  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 700 - 768
Target Start/End: Original strand, 27269856 - 27269924
Alignment:
Q  700 aaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 768  Q
    ||||||| ||||| ||||||||||||  |||||||| |||||||||||| ||||||||||||| |||||    
T  27269856 aaatgaaatatatcaccacatcaaaaagttctccctagtataaggtatgccagagagaaacactagagt 27269924  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 41995849 - 41995923
Alignment:
Q  694 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 768  Q
    |||||||||||||||||||||||||||||||||||  ||||| | |||||||||  |||||| | ||| ||||||    
T  41995849 aggctaaaatgaattatattaccacatcaaaagatcttccctagcataaggtataccagagaaagacatcagagt 41995923  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 769
Target Start/End: Complemental strand, 48337189 - 48337125
Alignment:
Q  705 aattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtt 769  Q
    |||||||||||||||||||||| |||||||| | |||||| ||| ||  || |||||||||||||    
T  48337189 aattatattaccacatcaaaaggttctccctagcataaggcatgccaaggaaaaacaccagagtt 48337125  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 748
Target Start/End: Complemental strand, 33436017 - 33435967
Alignment:
Q  698 taaaatgaattatattaccacatcaaaagattctcccttgtataaggtatg 748  Q
    ||||||||||||||||||||||||||||  |  ||||| ||||||||||||    
T  33436017 taaaatgaattatattaccacatcaaaatgtcttccctagtataaggtatg 33435967  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 878
Target Start/End: Original strand, 30972361 - 30972427
Alignment:
Q  816 aataactattagcctatgcccaaaatagagaagggactatgcca----ccatgatagttgaagggaa 878  Q
    |||||||||||||||||||| ||||||| |||  ||||| ||||    |||||||||||||||||||    
T  30972361 aataactattagcctatgccaaaaatagtgaaatgactaagccaccagccatgatagttgaagggaa 30972427  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 21524081 - 21524007
Alignment:
Q  694 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 768  Q
    ||||||||||||||||||||||||||||||||| | || |||   | ||||||||||||||| | ||||||||||    
T  21524081 aggctaaaatgaattatattaccacatcaaaaggtccttcctaacacaaggtatgtcagagaaagacaccagagt 21524007  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 39840158 - 39840084
Alignment:
Q  694 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 768  Q
    ||||||||| ||||||||||||||||||||||| | |||||| | | || ||||| |||||| | ||||||||||    
T  39840158 aggctaaaacgaattatattaccacatcaaaaggtcctccctagcacaatgtatgccagagaaagacaccagagt 39840084  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 787
Target Start/End: Complemental strand, 27076818 - 27076729
Alignment:
Q  698 taaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtttgcaaatatttacaaggg 787  Q
    ||||||||||||||||||||||| |||| ||||| |||   | ||||||||| || ||||| |||| ||||   ||||||||||||||||    
T  27076818 taaaatgaattatattaccacattaaaaaattcttcctaacacaaggtatgttagggagaatcacctgagtcaacaaatatttacaaggg 27076729  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 787
Target Start/End: Original strand, 27201483 - 27201572
Alignment:
Q  698 taaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtttgcaaatatttacaaggg 787  Q
    ||||||||||||||||||||||| |||| ||||| |||   | ||||||||| || ||||| |||| ||||   ||||||||||||||||    
T  27201483 taaaatgaattatattaccacattaaaaaattcttcctaacacaaggtatgttagggagaatcacctgagtcaacaaatatttacaaggg 27201572  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 726
Target Start/End: Original strand, 29374549 - 29374584
Alignment:
Q  691 aaaaggctaaaatgaattatattaccacatcaaaag 726  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29374549 aaaagactaaaatgaattatattaccacatcaaaag 29374584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 725
Target Start/End: Original strand, 43026160 - 43026191
Alignment:
Q  694 aggctaaaatgaattatattaccacatcaaaa 725  Q
    ||||||||||||||||||||||||||||||||    
T  43026160 aggctaaaatgaattatattaccacatcaaaa 43026191  T

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Target: scaffold0204 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 769
Target Start/End: Complemental strand, 24711 - 24647
Alignment:
Q  705 aattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtt 769  Q
    |||||||||||||||||||||| |||||||| | |||||| ||| ||  || |||||||||||||    
T  24711 aattatattaccacatcaaaaggttctccctagcataaggcatgccaaggaaaaacaccagagtt 24647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 726
Target Start/End: Original strand, 14215867 - 14215899
Alignment:
Q  694 aggctaaaatgaattatattaccacatcaaaag 726  Q
    |||||||||||||||||||||||||||||||||    
T  14215867 aggctaaaatgaattatattaccacatcaaaag 14215899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 725
Target Start/End: Complemental strand, 5673416 - 5673382
Alignment:
Q  691 aaaaggctaaaatgaattatattaccacatcaaaa 725  Q
    ||||||||||||||||||||||||||| |||||||    
T  5673416 aaaaggctaaaatgaattatattaccaaatcaaaa 5673382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 725
Target Start/End: Original strand, 30428455 - 30428488
Alignment:
Q  692 aaaggctaaaatgaattatattaccacatcaaaa 725  Q
    |||||||||||||||||||||||||||| |||||    
T  30428455 aaaggctaaaatgaattatattaccacaacaaaa 30428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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