View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5909-Insertion-4 (Length: 655)

Name: NF5909-Insertion-4
Description: NF5909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5909-Insertion-4
NF5909-Insertion-4
[»] chr3 (1 HSPs)
chr3 (8-655)||(50234727-50235375)


Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 8 - 655
Target Start/End: Original strand, 50234727 - 50235375
Alignment:
Q  8 actctccacgttcagcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccgttaccattcttgcccttgacaacaaagctatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234727 actctccacgttcagcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccgttaccattcttgcccttgacaacaaagctatt 50234826  T
Q  108 gcttctctttctggtaaaccaattgacgccattaaagccgttattgggacccatgttatacctgaattctacgatgagaaaaaactttt-gatatcattg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50234827 gcttctctttctggtaaaccaattgacgccattaaagccgttattgggacccatgttatacctgaattctacgatgagaaaaaactttttgatatcattg 50234926  T
Q  207 gaagccatgcacaattgcctacactttcaaccgctccaggtttagccgctaaaatctacgtgtcacttattaatgaaggtgaaatggcatttagttctgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234927 gaagccatgcacaattgcctacactttcaaccgctccaggtttagccgctaaaatctacgtgtcacttattaatgaaggtgaaatggcatttagttctgc 50235026  T
Q  307 tgttgaaggctcaaccttcgatgccacgcttgttcaaagcactgaggctgaaccaggcgttgtttcaattctccaggtttcacagccaattgttaaggtt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235027 tgttgaaggctcaaccttcgatgccacgcttgttcaaagcactgaggctgaaccaggcgttgtttcaattctccaggtttcacagccaattgttaaggtt 50235126  T
Q  407 ggtgcttcagctccggcaactccagcaacactatcaaaaccagcaacacctgcagctgtgtcaacatccagtgccggtgaggttgcaacaccagcagctg 506  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235127 ggtgcttcagctccagcaactccagcaacactatcaaaaccagcaacacctgcagctgtgtcaacatccagtgccggtgaggttgcaacaccagcagctg 50235226  T
Q  507 tgccaacatccggtgccggtcaggttacaacaccagcagcatcaccttctgtggtgattgctgagtcacctgagagttttggtgatgcacctgctcctgc 606  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235227 tgccagcatccggtgccggtcaggttacaacaccagcagcatcaccttctgtggtgattgctgagtcacctgagagttttggtgatgcacctgctcctgc 50235326  T
Q  607 tcctagtgcctcttctcgtgccacattcagattcattggtgctgttatt 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235327 tcctagtgcctcttctcgtgccacattcagattcattggtgctgttatt 50235375  T

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