View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5909-Insertion-5 (Length: 590)
Name: NF5909-Insertion-5
Description: NF5909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5909-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Original strand, 48279006 - 48279595
Alignment:
| Q |
8 |
acaaagttggcgaaataaaaagaaatcaacaataaattattcccatatgaaccaaaattgagtaaaacaattatctcagatgaactacctctaccaaaca |
107 |
Q |
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| T |
48279006 |
acaaagttggcgaaataaaaagaaatcaacaataaattattcccatatgaaccaaaattgagtaaaacaattatctcagataaactacctctaccaaaca |
48279105 |
T |
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| Q |
108 |
tgtcaatagtcaacttggttgtttcaacttccatatttcttctcaaagttcttccttcttaaactctca--------ctcactcatcatgaaccaagaat |
199 |
Q |
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| T |
48279106 |
tgtcaatagtcaacttggttgtttcaacttccatatttcttctcaaagttcttccttcttaaactctcactcactcactcactcatcatgaaccaagaat |
48279205 |
T |
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| Q |
200 |
aatcaaatctacacaatggcatcttgcttgaaaccacaaagcagcaatgaagatgattctgtcatactcttttcaacttctaattcttccattagtcctt |
299 |
Q |
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| T |
48279206 |
aatcaaatctacacaatggcatcttgcttgaaaccacaaagcagcaatgaagatgattctgtcatactcttttcaacttctaattcttccattagtcctt |
48279305 |
T |
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| Q |
300 |
cttcctcttctttccatcattcaccaccaccaacttcatacaaactttctattaataacctcacctatactttgcacccttataaaaccattcccttttc |
399 |
Q |
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| T |
48279306 |
cttcctcttctttccatcattcaccaccaccaacttcatacaaactttctattaataacctcacctatactttgcacccttataaaaccattcccttttc |
48279405 |
T |
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| Q |
400 |
atttaaaagccttactcaaaaaccacatcctgtaaacatactcaaatctgtttcttttgttgccagaacttccgaaattctcgcagttgtcggacctagt |
499 |
Q |
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| T |
48279406 |
atttaaaagccttactcaaaaaccacatcctgtaaacatactcaaatctgtttcttttgttgccagaacttccgaaattgtcgcagttgtcggacctagt |
48279505 |
T |
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| Q |
500 |
ggcacaggcaaatccacccttcttagaataatcgcggggcgaataaaagacaagagatttcaaccccaaaactatctccatcaatgatcac |
590 |
Q |
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| T |
48279506 |
ggcacaggcaaatccacccttcttagaataatcgcggggcgaataaaagacaa-agatttcaaccccaaaactatctcaatcaatgatcac |
48279595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 497 - 590
Target Start/End: Original strand, 14335903 - 14335995
Alignment:
| Q |
497 |
agtggcacaggcaaatccacccttcttagaataatcgcggggcgaataaaagacaagagatttcaaccccaaaactatctccatcaatgatcac |
590 |
Q |
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| T |
14335903 |
agtggtacaagcaaatctacccttctcctaataatcgcgggccgagtaaaagacaa-agatttcaatccaaaaactatctcaatcaatgatcac |
14335995 |
T |
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