View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910-Insertion-10 (Length: 322)
Name: NF5910-Insertion-10
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910-Insertion-10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 39511254 - 39511379
Alignment:
| Q |
196 |
ccaaaacataacgcaaaattcaaacacgaatttagttttgaagttttagtcataagaaagcaagaattataactacaacgcaaatctaaacacaaatttg |
295 |
Q |
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| T |
39511254 |
ccaaaatagaacgcaaaattcaaacacaaatttaattt-gaagttttagtcataaaaaagcaagaattataactacaacgcaaatctaaacacaaatttg |
39511352 |
T |
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| Q |
296 |
gaatccctactataagaagatcttgta |
322 |
Q |
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| T |
39511353 |
aaatccctactataagaagatcttgta |
39511379 |
T |
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Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 39511031 - 39511195
Alignment:
| Q |
9 |
tagctctccaaaattctcttctctaaaaatgaannnnnnnnaaataagaaaactctacgcacacatttggaaca----ggtatgaatccctcttaaccca |
104 |
Q |
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|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
39511031 |
tagctctccaaaattctcttctctaaaaattaaatttttt-agataagaaaactctacgcacacatttggaacaagtaggtatgaatccctctcaaccca |
39511129 |
T |
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| Q |
105 |
catgcatcataagcgtgagcttacatatgaaaccatggtgtgagtcccttcgaatatgcaacgatcaa |
172 |
Q |
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| T |
39511130 |
catgcgtcataagcgcgagcttacatatgaaaccatg--gtgaatcccttcgaacatgcaaccatcaa |
39511195 |
T |
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