View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910-Insertion-12 (Length: 271)
Name: NF5910-Insertion-12
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910-Insertion-12 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 34674533 - 34674795
Alignment:
| Q |
9 |
acactgacaatgcatattcccttttctgtagaatgtaatacaaacatacctgcgcaacccaatgatgatatgtattgcttatattggtcctcctccaagc |
108 |
Q |
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| T |
34674533 |
acactgacaatacatattcccttttctgtagaatgtaatacaaacatacctgcgcaacccaatgatgatatttattgcttatattggtcctcctccaagc |
34674632 |
T |
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| Q |
109 |
ttccaaatcaaaaatgttcatgccataggcccaagcacattcgttgggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaac |
208 |
Q |
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| T |
34674633 |
ttccaaatcaaaaatgttcatgccataggcccaagcacattcgttgggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaac |
34674732 |
T |
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| Q |
209 |
cttttcgacatcacaaacttgtcttctccattgcatgtttccactgctccattcacttttcca |
271 |
Q |
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| T |
34674733 |
cttttcgacatcacaaacttgtcttctccattgcatgtttccactgctccattcacttttcca |
34674795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 271
Target Start/End: Original strand, 55869914 - 55870131
Alignment:
| Q |
54 |
atacctgcgcaacccaatgatgatatgtattgcttatattggtcctcctccaagcttccaaatcaaaaatgttcatgccataggcccaagcacattcgtt |
153 |
Q |
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| T |
55869914 |
atacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatt |
55870013 |
T |
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| Q |
154 |
gggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccact |
253 |
Q |
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| T |
55870014 |
tggatcaaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctact |
55870113 |
T |
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| Q |
254 |
gctccattcacttttcca |
271 |
Q |
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| T |
55870114 |
gctccgttgacttttcca |
55870131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 31536458 - 31536357
Alignment:
| Q |
170 |
gatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccactgctccattcacttttc |
269 |
Q |
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| T |
31536458 |
gatattagagggtgggagaagtacaaatagcttttcaacctctttgagatcacaagtttatcttcccctttgtatggttctactactccattgacttttc |
31536359 |
T |
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| Q |
270 |
ca |
271 |
Q |
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|| |
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| T |
31536358 |
ca |
31536357 |
T |
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