View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5910-Insertion-2 (Length: 1111)

Name: NF5910-Insertion-2
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5910-Insertion-2
NF5910-Insertion-2
[»] chr1 (20 HSPs)
chr1 (347-954)||(47838156-47838766)
chr1 (8-207)||(47838904-47839106)
chr1 (628-909)||(47824947-47825228)
chr1 (597-911)||(47829660-47829971)
chr1 (600-833)||(2541397-2541630)
chr1 (412-587)||(10490118-10490294)
chr1 (503-588)||(26399145-26399231)
chr1 (395-585)||(8985671-8985861)
chr1 (478-588)||(38741475-38741586)
chr1 (483-585)||(47839915-47840015)
chr1 (490-570)||(33934656-33934736)
chr1 (483-576)||(33936030-33936122)
chr1 (503-588)||(26190730-26190817)
chr1 (556-589)||(972840-972873)
chr1 (503-588)||(5931960-5932048)
chr1 (528-589)||(7454888-7454949)
chr1 (525-588)||(8984853-8984918)
chr1 (478-570)||(9442935-9443028)
chr1 (503-588)||(21771012-21771097)
chr1 (556-589)||(51809755-51809788)
[»] chr3 (25 HSPs)
chr3 (597-931)||(20960651-20960989)
chr3 (597-905)||(20974561-20974870)
chr3 (528-588)||(19301179-19301239)
chr3 (478-570)||(15086241-15086334)
chr3 (531-579)||(3207551-3207599)
chr3 (503-586)||(14004553-14004637)
chr3 (483-570)||(14824769-14824857)
chr3 (530-589)||(26769920-26769980)
chr3 (528-588)||(39846577-39846637)
chr3 (556-588)||(44986766-44986798)
chr3 (501-575)||(4217689-4217764)
chr3 (503-588)||(5572242-5572329)
chr3 (528-587)||(8487914-8487973)
chr3 (503-589)||(14155065-14155151)
chr3 (503-578)||(16897377-16897452)
chr3 (528-587)||(46993874-46993933)
chr3 (538-588)||(12066229-12066279)
chr3 (483-588)||(14826026-14826132)
chr3 (503-588)||(19111229-19111315)
chr3 (501-575)||(24528531-24528605)
chr3 (503-588)||(3505002-3505087)
chr3 (506-589)||(5571951-5572036)
chr3 (528-588)||(20123856-20123917)
chr3 (501-569)||(29184950-29185019)
chr3 (542-587)||(43110718-43110763)
[»] chr2 (25 HSPs)
chr2 (597-911)||(11620833-11621149)
chr2 (501-588)||(45161349-45161437)
chr2 (507-589)||(19272661-19272744)
chr2 (503-588)||(38127763-38127849)
chr2 (478-570)||(1904354-1904447)
chr2 (528-589)||(5558449-5558510)
chr2 (503-588)||(9419501-9419586)
chr2 (531-576)||(20182276-20182321)
chr2 (528-589)||(29640762-29640823)
chr2 (478-570)||(38935962-38936055)
chr2 (528-588)||(14793252-14793312)
chr2 (528-588)||(22552505-22552565)
chr2 (528-588)||(24951904-24951964)
chr2 (553-585)||(29966341-29966373)
chr2 (528-588)||(39341353-39341412)
chr2 (528-588)||(45632543-45632603)
chr2 (528-587)||(5558223-5558282)
chr2 (478-570)||(7576344-7576437)
chr2 (528-588)||(8214343-8214404)
chr2 (503-588)||(16139088-16139173)
chr2 (556-589)||(17688178-17688211)
chr2 (556-589)||(31108608-31108641)
chr2 (556-589)||(32596404-32596437)
chr2 (556-589)||(38470984-38471017)
chr2 (528-589)||(44610926-44610987)
[»] chr8 (17 HSPs)
chr8 (597-787)||(16775656-16775848)
chr8 (800-911)||(16759209-16759320)
chr8 (503-588)||(2873737-2873822)
chr8 (483-570)||(9768255-9768343)
chr8 (528-588)||(23428934-23428994)
chr8 (503-588)||(30222059-30222144)
chr8 (556-588)||(38687536-38687568)
chr8 (556-587)||(3448897-3448928)
chr8 (503-589)||(34845283-34845370)
chr8 (530-569)||(40701366-40701405)
chr8 (528-589)||(11105769-11105831)
chr8 (528-589)||(18367025-18367087)
chr8 (503-588)||(23389020-23389105)
chr8 (531-588)||(21692605-21692662)
chr8 (528-589)||(23428735-23428796)
chr8 (478-570)||(27163135-27163228)
chr8 (478-570)||(39808666-39808759)
[»] chr4 (16 HSPs)
chr4 (483-584)||(52264449-52264550)
chr4 (503-588)||(3652271-3652357)
chr4 (527-589)||(22451932-22451994)
chr4 (526-588)||(46360688-46360750)
chr4 (528-588)||(28292053-28292113)
chr4 (528-588)||(36405850-36405910)
chr4 (507-571)||(46088343-46088407)
chr4 (478-588)||(14183611-14183722)
chr4 (501-554)||(21023030-21023084)
chr4 (528-588)||(13032887-13032948)
chr4 (528-588)||(13910623-13910684)
chr4 (506-579)||(14946249-14946322)
chr4 (528-588)||(20514655-20514716)
chr4 (556-589)||(34318404-34318437)
chr4 (478-570)||(34739907-34740000)
chr4 (556-589)||(51902045-51902078)
[»] chr5 (18 HSPs)
chr5 (488-588)||(25453332-25453431)
chr5 (483-588)||(26888408-26888514)
chr5 (503-584)||(8861494-8861576)
chr5 (503-588)||(25962802-25962888)
chr5 (503-588)||(31312742-31312828)
chr5 (488-568)||(40434011-40434088)
chr5 (478-570)||(15616445-15616538)
chr5 (503-588)||(29690962-29691047)
chr5 (503-588)||(37082246-37082331)
chr5 (478-565)||(21775485-21775573)
chr5 (503-589)||(22756353-22756441)
chr5 (528-584)||(41184946-41185002)
chr5 (478-575)||(15061769-15061867)
chr5 (501-570)||(35600507-35600577)
chr5 (528-588)||(3214839-3214900)
chr5 (529-589)||(25088863-25088924)
chr5 (529-589)||(25146832-25146893)
chr5 (503-587)||(37217492-37217576)
[»] scaffold0002 (1 HSPs)
scaffold0002 (503-586)||(332067-332150)
[»] chr7 (13 HSPs)
chr7 (503-589)||(35158182-35158269)
chr7 (503-588)||(21444154-21444240)
chr7 (528-588)||(24478024-24478084)
chr7 (503-589)||(36374146-36374232)
chr7 (503-588)||(442823-442909)
chr7 (478-588)||(1831926-1832036)
chr7 (503-588)||(12005264-12005350)
chr7 (478-567)||(17764645-17764735)
chr7 (542-588)||(20164434-20164480)
chr7 (503-569)||(38192615-38192681)
chr7 (528-588)||(19336043-19336104)
chr7 (502-571)||(38092053-38092122)
chr7 (528-588)||(42509034-42509095)
[»] chr6 (16 HSPs)
chr6 (503-588)||(18591121-18591206)
chr6 (527-587)||(14924965-14925024)
chr6 (529-588)||(14985306-14985365)
chr6 (528-588)||(10545831-10545892)
chr6 (478-570)||(24234348-24234441)
chr6 (528-588)||(33552766-33552827)
chr6 (549-588)||(11425786-11425825)
chr6 (537-588)||(22253280-22253331)
chr6 (488-589)||(28583546-28583649)
chr6 (542-588)||(2033109-2033155)
chr6 (528-586)||(14974569-14974627)
chr6 (556-589)||(2181316-2181349)
chr6 (548-585)||(5702058-5702095)
chr6 (505-589)||(10343498-10343582)
chr6 (529-586)||(10546177-10546234)
chr6 (528-589)||(33352612-33352673)
[»] scaffold0019 (1 HSPs)
scaffold0019 (528-588)||(174600-174660)
[»] scaffold0004 (1 HSPs)
scaffold0004 (503-589)||(212512-212599)
[»] scaffold0258 (1 HSPs)
scaffold0258 (503-588)||(18643-18728)
[»] scaffold0228 (3 HSPs)
scaffold0228 (525-570)||(8101-8146)
scaffold0228 (525-570)||(15683-15728)
scaffold0228 (525-570)||(25635-25680)
[»] scaffold0111 (1 HSPs)
scaffold0111 (528-588)||(29680-29740)
[»] scaffold0022 (1 HSPs)
scaffold0022 (503-589)||(63320-63407)
[»] scaffold0192 (1 HSPs)
scaffold0192 (528-588)||(14443-14504)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 347 - 954
Target Start/End: Complemental strand, 47838766 - 47838156
Alignment:
Q  347 aaatacataattacatatggcaatgaattatacacatggaaggacgataaaaattgaaaaagttaataatataaacagtcatgtgccacgtcagcaccac 446  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  47838766 aaatacataattacat--ggcaatgaattatacacatggaaggacca-aaaaattgaaaaagttaataatataaacagtcatgtgccacgtcagcgccat 47838670  T
Q  447 ataagggaatctggtaactcagatgatttatggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttatttt--acaggggcaaa 544  Q
    ||||||||||||||| |||| ||||  ||| ||| |||||||||||||||||||||||||||||||| |||||||   |||| ||||  ||||||| |||    
T  47838669 ataagggaatctggtgactctgatggcttaggggacatttttgaagaatcttacttttacaaggatggaatccaattttttttttttttacaggggtaaa 47838570  T
Q  545 atcgaaagtggcctatattacaggggataaaacaccattaacccannnnnnnaagtccaatataaatttgtttcattccttcgtcatttcttaaccatca 644  Q
    |   |||||| ||||||||||||||| |||||||| |||||||||       ||||||||||| ||||||||||||||| ||||||||| |||| |||||    
T  47838569 actaaaagtgacctatattacagggg-taaaacactattaacccatctttttaagtccaatatgaatttgtttcattccctcgtcattttttaatcatca 47838471  T
Q  645 attgggagtttcaaaattatgatcaagtgtnnnnnnn-gtgggttaggggataacaattagtatttatgctaaaatcaattaaaagttattgaataattt 743  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||    
T  47838470 attgggagtttcaaaattatgatcaagtgtaaaaaaaagtgggttaggggataacaattagtgtttgtgcaaaaatcaattaaaatttattgaataattt 47838371  T
Q  744 acatactttttggttttcgagattttatttccattgaagataattgtatttgaggcatgttagactcaaatgtggatacatgtttcagccaccacattgt 843  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  47838370 atatactttttggttttcgagattttatttccattgaagataattgtattcgaggcatgttagactcaaatgtggatacatctttcggccgccacattgt 47838271  T
Q  844 gctaatttaatttcttccgttagaccaaacctctcgttggtaattttagtattatgatgatgcatgta--ttaaaagtttaattcattgtgaa--gattc 939  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||||| ||  | |||    
T  47838270 gctaatttaatttcttccgttagaccaaacctctcgttggtaattttagcattatgatgatgcatgtaattaaaaagtttaattcattgttaaaggtttc 47838171  T
Q  940 actacatgtaggctt 954  Q
    |||||||||| ||||    
T  47838170 actacatgtaagctt 47838156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 47839106 - 47838904
Alignment:
Q  8 agttaatttatgaggagttttcaatttaagtaagttctcttatttagtgacatattggaagggatatcaagatttagtgaagagattgaatggg--agag 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  47839106 agttaatttatgaggagttttcaacttaagtaagttctcttatttagtgacatattggaagggatatcaagatttagtgaagagattgaatgggagagag 47839007  T
Q  106 gaaccaataatggggaagataagaggagaaagagaagaagatgtataattatg-tttggatttttaagaaaagaaagtttagaattcatggattttttgg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47839006 gaaccaataatggggaagataagaggagaaagagaagaagatgtataattatgttttggatttttaagaaaagaaagtttagaattcatggattttttgg 47838907  T
Q  205 gtt 207  Q
    |||    
T  47838906 gtt 47838904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 628 - 909
Target Start/End: Complemental strand, 47825228 - 47824947
Alignment:
Q  628 tcatttcttaaccatcaattgggagtttcaaaattatgatcaagtgtnnnnnnngtgggttaggggataacaattagtatttatgctaaaatcaattaaa 727  Q
    |||||| |||| ||||| |||||| ||||||||| ||||||||||||       ||| ||||| |||||||||||||||||| |||||||||||||||||    
T  47825228 tcattttttaatcatcagttgggaatttcaaaatcatgatcaagtgttgaaaaagtgagttagaggataacaattagtatttgtgctaaaatcaattaaa 47825129  T
Q  728 agttattgaataatttacatactttttggttttcgagattttatttccattgaagataattgtatttgaggcatgttagactcaaatgtggatacatgtt 827  Q
    | ||||||||||||||||||| ||||| || ||| | | ||||| |||||||||||||||  |||| || | ||||||||| ||||||||||||||| ||    
T  47825128 atttattgaataatttacatatttttttgtcttccacaatttatatccattgaagataatcctattcgaagtatgttagacacaaatgtggatacatctt 47825029  T
Q  828 tcagccaccacattgtgctaatttaatttcttccgttagaccaaacctctcgttggtaattttagtattatgatgatgcatg 909  Q
    | |||  || |  ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  47825028 ttagctgccgcgatgtgctaatttaatttcttccgttataccaaacctctcgttggtaattttagcattatgatgatgcatg 47824947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 597 - 911
Target Start/End: Complemental strand, 47829971 - 47829660
Alignment:
Q  597 aagtccaatataaatttgtttcattccttcgtcatttcttaaccatcaattgggagtttcaaaattatgatcaagtgtnnnnnnngtgggttaggggata 696  Q
    ||||||||||| ||| ||||||||||| || |||||| |||| ||||| ||||||||| |||||| ||||||||||||       |||||| |  | |||    
T  47829971 aagtccaatatgaatctgtttcattccctcatcattttttaatcatcagttgggagtt-caaaatcatgatcaagtgtaaaaaa-gtgggtcaaag-ata 47829875  T
Q  697 acaattagtatttatgctaaaatcaattaaaagttattgaataatttacatactttttggttttcgagattttatttccattgaagataattgtatttga 796  Q
    |||||| |||||| ||||||||||||||||||||||| | |||||||| ||| |||| ||||||| | | |||||||||||| ||||||||| |||| ||    
T  47829874 acaattggtatttgtgctaaaatcaattaaaagttatgggataatttaaatatttttgggttttccacaatttatttccattaaagataattctattcga 47829775  T
Q  797 ggcatgttagactcaaatgtggatacatgtttcagccaccacattgtgctaatttaatttcttccgttagaccaaacctctcgttggtaattttagtatt 896  Q
    || ||||||||| ||||||||||||||| ||| |||  ||||  ||||||||||||||||||||||||||||||||||||| |||  ||| ||||| |||    
T  47829774 ggtatgttagacacaaatgtggatacattttttagctgccacgatgtgctaatttaatttcttccgttagaccaaacctcttgttattaactttagcatt 47829675  T
Q  897 atgatgatgcatgta 911  Q
    |||||| ||||||||    
T  47829674 atgatgctgcatgta 47829660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 600 - 833
Target Start/End: Original strand, 2541397 - 2541630
Alignment:
Q  600 tccaatataaatttgtttcattccttcgtcatttcttaaccatcaattgggagtttcaaaattatgatcaagtgtnnnnnnngtgggttaggggataaca 699  Q
    |||||||| ||| ||||||||||| || |||||| |||| ||||| |||||||||||||||| ||||||||||||       |||| | |   |||||||    
T  2541397 tccaatatgaatctgtttcattccctcatcattttttaatcatcagttgggagtttcaaaatcatgatcaagtgtaaaaaaggtggatcataagataaca 2541496  T
Q  700 attagtatttatgctaaaatcaattaaaagttattgaataatttacatactttttggttttcgagattttatttccattgaagataattgtatttgaggc 799  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||| | | |||||||||||||||||||||  |||| ||||     
T  2541497 attagtatttgtgctaaaatcaattaaaagttatgggataatttacatattttttggttttccacaatttatttccattgaagataatcctattcgaggt 2541596  T
Q  800 atgttagactcaaatgtggatacatgtttcagcc 833  Q
    |||||||||  |||||||||||||| ||||||||    
T  2541597 atgttagacataaatgtggatacatctttcagcc 2541630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 412 - 587
Target Start/End: Original strand, 10490118 - 10490294
Alignment:
Q  412 ataatataaacagtcatgtgccacgtcagcaccacataagggaatctggtaactcagatgatttatggggcatttttgaagaatcttacttttacaagga 511  Q
    |||||||| ||||||| ||||||||||||| |||| ||||| ||| |||| | ||| ||  | || ||| |||||||||| ||||||| |||||||||||    
T  10490118 ataatatacacagtcacgtgccacgtcagcgccacgtaaggaaatttggtgagtcaaatagtctaggggccatttttgaataatcttatttttacaagga 10490217  T
Q  512 tgaaatccaaaacttttattttacag-gggcaaaatcgaaagtggcctatattacagggga-taaaacaccattaacc 587  Q
    || |||||||||||||| |||||||| ||  |||| | ||| || |||||||||||||||| |||| ||| |||||||    
T  10490218 tggaatccaaaactttt-ttttacagaggataaaaccaaaaatgacctatattacaggggagtaaagcactattaacc 10490294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 26399145 - 26399231
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||| |||||||||||  | ||||||||| |||| |||||||||| || ||||||||||||||| |||||||| ||||||||    
T  26399145 ttacaaggacgaaatccaaaaaatatattttacaaggggtaaaatcgaaaatgacctatattacagggggtaaaacactattaaccc 26399231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 395 - 585
Target Start/End: Original strand, 8985671 - 8985861
Alignment:
Q  395 aaaaattgaaaaagttaataatataaacagtcatgtgccacgtcagcaccacataagggaatctggtaactcagatgatttatggggcatttttgaagaa 494  Q
    ||||| ||||||| | ||||||||| ||||||||||||||| ||| | || | |||||||||||| | | ||||||| | || |||| |||||   ||||    
T  8985671 aaaaaatgaaaaaataaataatatacacagtcatgtgccacatcaacgccgcgtaagggaatctgatgagtcagatggtctacggggtattttcagagaa 8985770  T
Q  495 tcttacttttacaaggatgaaatccaaaacttttattttacag-gggcaaaatcgaaagtggcctatattacaggggataaaacaccattaa 585  Q
    ||| ||||||||||||| | |||| |||  |||| |||||| |  | |||||   |||||| ||||||||||||||| |||||||| |||||    
T  8985771 tctcacttttacaaggacggaatctaaatatttt-ttttacggaagacaaaactaaaagtgtcctatattacagggggtaaaacactattaa 8985861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 478 - 588
Target Start/End: Complemental strand, 38741586 - 38741475
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacaggggataaaa 576  Q
    |||||| || |||||||||||  |||||||||||||||||| ||||    ||||||||| ||||||||| | |||||| | ||||||||||||| |||||    
T  38741586 ggggcaattctgaagaatctttattttacaaggatgaaatctaaaaaaaatattttacagggggcaaaaccaaaagtgtcttatattacaggggttaaaa 38741487  T
Q  577 caccattaaccc 588  Q
    ||  ||||||||    
T  38741486 cattattaaccc 38741475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 483 - 585
Target Start/End: Original strand, 47839915 - 47840015
Alignment:
Q  483 atttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccat 582  Q
    |||| |||||||||||  ||||||||||||  |||||||||||||| ||||||||||| ||||   ||| || ||||||||||||||| |||||||| ||    
T  47839915 atttctgaagaatcttgattttacaaggatagaatccaaaactttt-ttttacagggg-aaaacaaaaaatgacctatattacagggggtaaaacactat 47840012  T
Q  583 taa 585  Q
    |||    
T  47840013 taa 47840015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 33934736 - 33934656
Alignment:
Q  490 aagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||||||  ||||||||||| |||||| ||||||||| ||||||| ||||||||| | ||||||  ||||||||||||||    
T  33934736 aagaatcttgattttacaaggacgaaatctaaaactttt-ttttacagggggcaaaaccaaaagtgatctatattacagggg 33934656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 483 - 576
Target Start/End: Original strand, 33936030 - 33936122
Alignment:
Q  483 atttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaa 576  Q
    |||| |||||||||||  | |||| |||| | |||| ||||||||| |||||||||||| ||| | |||||| ||||||||||||||| |||||    
T  33936030 atttctgaagaatcttgatcttacgaggacggaatctaaaactttttttttacaggggcgaaa-ccaaagtgacctatattacagggggtaaaa 33936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 26190817 - 26190730
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattac-aggggataaaacaccattaaccc 588  Q
    |||||||||  ||||||||||  ||||||||||| |||| |||| ||||| || |||||||||| ||||| |||||||| ||||||||    
T  26190817 ttacaaggacaaaatccaaaaaatttattttacagggggtaaaaccgaaaatgacctatattacaagggggtaaaacactattaaccc 26190730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Complemental strand, 972873 - 972840
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  972873 cctatattacagggggtaaaacaccattaaccca 972840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 5932048 - 5931960
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattaca--ggggataaaacaccattaaccc 588  Q
    ||||||||| |||||||||||  | ||||||||| |||| |||| ||||| || |||||||||||  |||| |||||||| ||||||||    
T  5932048 ttacaaggacgaaatccaaaaaatatattttacagggggtaaaaccgaaaatgacctatattacagggggggtaaaacactattaaccc 5931960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 7454949 - 7454888
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||| ||| |||||  ||| || ||||||||||||||| |||| |||||||||||||    
T  7454949 tattttacaaggggaaaataaaaaatgacctatattacagggggtaaagcaccattaaccca 7454888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 525 - 588
Target Start/End: Complemental strand, 8984918 - 8984853
Alignment:
Q  525 ttttattttacagggg-caaaatcgaaagtggcctatattaca-ggggataaaacaccattaaccc 588  Q
    |||| ||||||||||| ||||||| |||||||||||||||||| |||| |||||| | ||||||||    
T  8984918 tttttttttacagggggcaaaatcaaaagtggcctatattacatggggctaaaactctattaaccc 8984853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Original strand, 9442935 - 9443028
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttac-aggggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| ||||  ||| |||||| |||||||||| | ||||||  ||||||||||||||    
T  9442935 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaattttttttacaaggggcaaaaccaaaagtgctctatattacagggg 9443028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 21771012 - 21771097
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||| |||||    |||||||||||||  ||| || || || ||||||||||||||| |||| ||| ||||||||    
T  21771012 ttacaaggatgaaattcaaaaaaaatattttacaggggggaaaccggaaatgacctatattacagggggtaaagcactattaaccc 21771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Complemental strand, 51809788 - 51809755
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  51809788 cctatattacagggggtaaaacaccattaaccca 51809755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 7e-52; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 597 - 931
Target Start/End: Original strand, 20960651 - 20960989
Alignment:
Q  597 aagtccaatataaatttgtttcattccttcgtcatttcttaaccatcaattgggagtttcaaaattatgatcaagtgtnnnnnnn-gtgggttaggggat 695  Q
    ||||||||||| ||||||||||||||| ||||||||| |||| ||||| ||| |||||| ||||| ||||||||| ||        |||| | | |||||    
T  20960651 aagtccaatatgaatttgtttcattccctcgtcattttttaatcatcagttgtgagttttaaaatcatgatcaagggtaaaaaaaagtggatcatgggat 20960750  T
Q  696 aacaattagtatttatgctaaaatcaattaaaagttattgaataatttacata--ctttttggttttcgagattttatttccattgaagataattgtatt 793  Q
    |||||||  ||||| |||||||||||||||||| |||||| ||||||||||||   |||||||||||| | | |||| ||||||||||||||||  ||||    
T  20960751 aacaatttatatttgtgctaaaatcaattaaaatttattggataatttacatattttttttggttttccacaattta-ttccattgaagataatcctatt 20960849  T
Q  794 tgaggcatgttagactcaaatgtggatacatgtttcagccaccacattgtgctaatttaatttcttccgttagaccaaacctctcgttggtaattttagt 893  Q
    || |  ||||||||| |||||||| |||||| |||||||  || |  ||| |||||||||| |||| ||||| ||||||||||||||||||||||| |      
T  20960850 tgggatatgttagacacaaatgtgaatacatctttcagctgccccgatgtactaatttaatgtctttcgttaaaccaaacctctcgttggtaatttaacc 20960949  T
Q  894 attatgatgatgcatgta--ttaaaagtttaattcattgt 931  Q
    |||||||||||| |||||  | |||| |||||||||||||    
T  20960950 attatgatgatgtatgtaattaaaaaatttaattcattgt 20960989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 597 - 905
Target Start/End: Original strand, 20974561 - 20974870
Alignment:
Q  597 aagtccaatataaatttgtttcattccttcgtcatttctt-aaccatcaattgggagtttcaaaattatgatcaagtgtnnnnnnngtgggttaggggat 695  Q
    ||||||||||| ||||||||||||||| || |||||| || || ||||| ||| |||||| ||||| ||| ||||||||       |||| |  | ||||    
T  20974561 aagtccaatatgaatttgtttcattccctcatcatttttttaatcatcagttgtgagttttaaaatcatggtcaagtgtaaaaaaagtggatc-gaggat 20974659  T
Q  696 aacaattagtatttatgctaaaatcaattaaaagttattgaataatttacatacttttt--ggttttcgagattttatttccattgaagataattgtatt 793  Q
    |||||||  ||||| |||||||||||||||||| |||||| |||||||||||| |||||  ||||||| | | |||||| ||||||||||||||  ||||    
T  20974660 aacaatttatatttgtgctaaaatcaattaaaatttattggataatttacatattttttttggttttccacaatttatt-ccattgaagataatcctatt 20974758  T
Q  794 tgaggcatgttagactcaaatgtggatacatgtttcagccaccacattgtgctaatttaatttcttccgttagaccaaacctctcgttggtaattttagt 893  Q
    |||   ||||||||| ||||||||||||||| ||||| |  ||||  |||||||||||||| |||| |||||||||||||||||||||||||| || ||     
T  20974759 tgaaatatgttagacacaaatgtggatacatctttcatctgccacgatgtgctaatttaatgtctttcgttagaccaaacctctcgttggtaacttaagc 20974858  T
Q  894 attatgatgatg 905  Q
    ||||||||||||    
T  20974859 attatgatgatg 20974870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 19301239 - 19301179
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||||  ||| || ||||||||||||||| |||||||||||||||||    
T  19301239 tattttacagggggaaaataaaaaatgacctatattacagggggtaaaacaccattaaccc 19301179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 15086334 - 15086241
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||| || |||||||||||  ||||||||||| | |||| |||  |||| ||||||| ||||||||| | |||||| |||||||||||||||    
T  15086334 ggggcaattgtgaagaatcttcattttacaaggacggaatctaaatatttttttttacagggggcaaaaccaaaagtgccctatattacagggg 15086241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 531 - 579
Target Start/End: Original strand, 3207551 - 3207599
Alignment:
Q  531 tttacaggggcaaaatcgaaagtggcctatattacaggggataaaacac 579  Q
    ||||||||| ||||| | |||||||||||||||||||||| ||||||||    
T  3207551 tttacagggccaaaaccaaaagtggcctatattacagggggtaaaacac 3207599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 503 - 586
Target Start/End: Original strand, 14004553 - 14004637
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacagg-ggcaaaatcgaaagtggcctatattacaggggataaaacaccattaac 586  Q
    |||||||||||||||||||||    ||||||| ||| || ||||||| || || ||||||||||||||| |||||||| ||||||    
T  14004553 ttacaaggatgaaatccaaaaaaaatattttagaggaggtaaaatcggaaatgacctatattacagggggtaaaacactattaac 14004637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 483 - 570
Target Start/End: Complemental strand, 14824857 - 14824769
Alignment:
Q  483 atttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacagggg 570  Q
    |||| |||||||||||  ||||||||||| | |||| ||||    ||||||||||||| ||||||| |||||| |||||||||||||||    
T  14824857 atttatgaagaatctttattttacaaggacggaatctaaaaaaaatattttacagggggcaaaatcaaaagtgacctatattacagggg 14824769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 530 - 589
Target Start/End: Complemental strand, 26769980 - 26769920
Alignment:
Q  530 ttttacaggg-gcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    |||||||||| | |||||||||| || ||||||||||||||| |||||||| |||||||||    
T  26769980 ttttacagggtggaaaatcgaaaatgacctatattacagggggtaaaacactattaaccca 26769920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 39846577 - 39846637
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| | ||| || ||||||||||||||| |||| ||||||||||||    
T  39846577 tattttacaggggaaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccc 39846637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 556 - 588
Target Start/End: Original strand, 44986766 - 44986798
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||||||||||||||||||||||||    
T  44986766 cctatattacaggggataaaacaccattaaccc 44986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 501 - 575
Target Start/End: Complemental strand, 4217764 - 4217689
Alignment:
Q  501 ttttacaaggatgaaatccaaaacttttattttacag-gggcaaaatcgaaagtggcctatattacaggggataaa 575  Q
    |||||||||||   ||||||||| |||| |||||||| |||||||||| |||||  ||||||||||||||| ||||    
T  4217764 ttttacaaggactgaatccaaaattttttttttacagagggcaaaatcaaaagttacctatattacagggggtaaa 4217689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 5572242 - 5572329
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacagggga-taaaacaccattaaccc 588  Q
    ||||||||| |||||||||||  | ||||||||| |||| |||| || || || |||||||||||||||| |||||||| ||||||||    
T  5572242 ttacaaggacgaaatccaaaaaatatattttacagggggtaaaaccggaaatgacctatattacaggggagtaaaacactattaaccc 5572329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 528 - 587
Target Start/End: Original strand, 8487914 - 8487973
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaacc 587  Q
    ||||||||||||| ||||   ||| || ||||||||||||||| ||||||||||||||||    
T  8487914 tattttacaggggaaaaacaaaaaatgacctatattacagggggtaaaacaccattaacc 8487973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 589
Target Start/End: Original strand, 14155065 - 14155151
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggca-aaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||| ||||||||||| | | ||||||||||||   ||||||||| || ||||||||||| ||| |||||||| |||||||||    
T  14155065 ttacaaggacgaaatccaaaaatat-attttacaggggatcaaatcgaaaatgacctatattacacggggtaaaacactattaaccca 14155151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 578
Target Start/End: Original strand, 16897377 - 16897452
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaaca 578  Q
    ||||||||| ||||||| |||    ||||||| ||||| |||||||||| || ||||||||||||||| |||||||    
T  16897377 ttacaaggacgaaatcctaaaaaaatattttagagggggaaaatcgaaaatgacctatattacagggggtaaaaca 16897452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 528 - 587
Target Start/End: Complemental strand, 46993933 - 46993874
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaacc 587  Q
    ||||||||||||| |||||  ||| || ||||||||||||| | ||||||||||||||||    
T  46993933 tattttacaggggaaaaataaaaaatgacctatattacaggaggtaaaacaccattaacc 46993874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 538 - 588
Target Start/End: Complemental strand, 12066279 - 12066229
Alignment:
Q  538 gggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||| |||||| ||||||||||||||| ||||| || ||||||||    
T  12066279 gggcaaaatcaaaagtgacctatattacagggggtaaaaaactattaaccc 12066229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 483 - 588
Target Start/End: Original strand, 14826026 - 14826132
Alignment:
Q  483 atttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacaggggataaaacacca 581  Q
    |||| |||||||||||  ||||||||||| | |||| ||||    ||||||||||||| ||||| | |||||| |  |||||||||||| |||||||| |    
T  14826026 atttctgaagaatctttattttacaaggacggaatctaaaaaaaatattttacagggggcaaaaccaaaagtgacaaatattacagggggtaaaacacta 14826125  T
Q  582 ttaaccc 588  Q
    |||||||    
T  14826126 ttaaccc 14826132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 19111229 - 19111315
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattaca-ggggataaaacaccattaaccc 588  Q
    |||||||||  ||||||||||    ||||||||||||| |||| | |||||| ||||||||||| |||| |||||||| ||||||||    
T  19111229 ttacaaggacaaaatccaaaaaaaatattttacaggggtaaaaccaaaagtgacctatattacaggggggtaaaacactattaaccc 19111315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 501 - 575
Target Start/End: Original strand, 24528531 - 24528605
Alignment:
Q  501 ttttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaa 575  Q
    |||||| |||| | ||||||||||||||||||||| ||||| ||||| ||| || | ||||||||| ||| ||||    
T  24528531 ttttacgaggacggaatccaaaacttttattttacgggggcgaaatcaaaaatgtcatatattacaaggggtaaa 24528605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 3505087 - 3505002
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||| |||||    ||||||||| ||  |||| || || |||||||||||||| ||| |||||||| ||||||||    
T  3505087 ttacaaggatgaaattcaaaaaaaatattttacaaggaaaaaaccgcaaatggcctatattacaaggggtaaaacactattaaccc 3505002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 506 - 589
Target Start/End: Complemental strand, 5572036 - 5571951
Alignment:
Q  506 caaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattaca-ggggataaaacaccattaaccca 589  Q
    |||||||||||| |||||    |||||||||||||| |||| ||||| || ||||||||||| ||||||||||||  |||||||||    
T  5572036 caaggatgaaattcaaaaaaaatattttacaggggcgaaaaccgaaaatgacctatattacagggggataaaacattattaaccca 5571951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 20123856 - 20123917
Alignment:
Q  528 tattttacaggg-gcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||| | |||||  ||| || ||||||||||||||| |||||||||||||||||    
T  20123856 tattttacagggaggaaaataaaaaatgacctatattacagggggtaaaacaccattaaccc 20123917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 29184950 - 29185019
Alignment:
Q  501 ttttacaaggatgaaatccaaaacttttattttacagg-ggcaaaatcgaaagtggcctatattacaggg 569  Q
    ||||||||||||  ||||||||  |||| ||||||||| ||||||| | |||||| ||||||||||||||    
T  29184950 ttttacaaggatcgaatccaaatttttttttttacaggaggcaaaaccaaaagtgacctatattacaggg 29185019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 43110718 - 43110763
Alignment:
Q  542 aaaatcgaaagtggcctatattacaggggataaaacaccattaacc 587  Q
    |||||| ||| || |||||||||||||||||||||||| |||||||    
T  43110718 aaaatcaaaaatgacctatattacaggggataaaacactattaacc 43110763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 3e-45; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 597 - 911
Target Start/End: Original strand, 11620833 - 11621149
Alignment:
Q  597 aagtccaatataaatttgtttcattccttcgtcatttcttaaccatcaattgggagtttcaaaattatgatcaagtgtnnnnnnn--gtgggttagggga 694  Q
    ||||||||| | ||||||||||||||| ||||  ||| |||| ||||| ||| ||||||  |||| ||||||||||||         |||| | || | |    
T  11620833 aagtccaatttgaatttgtttcattccctcgtagttttttaatcatcagttgtgagttttgaaatcatgatcaagtgtaaaaaaaaagtggataagagaa 11620932  T
Q  695 taacaattagtatttatgctaaaatcaattaaaagttattgaataatttacatacttttt-ggttttcgagattttatttccattgaagataattgtatt 793  Q
    || |||||  ||||| |||||||||||||||||| |||||| |||||||||||| ||||| ||||||| | | |||||| |||||| |||||||  | ||    
T  11620933 taccaatttatatttgtgctaaaatcaattaaaatttattggataatttacataattttttggttttccacaatttatt-ccattggagataatcctctt 11621031  T
Q  794 tgaggcatgttagactcaaatgtggatacatgtttcagccaccacattgtgctaatttaatttcttccgttagaccaaacctctcgttggtaattttagt 893  Q
    ||||  ||||||||| ||||||||||||||| |||||||  ||||  |||||||||||||| |||| ||||||||||||||||| ||||||||||| ||     
T  11621032 tgagatatgttagacacaaatgtggatacatctttcagctgccacgatgtgctaatttaatgtctttcgttagaccaaacctcttgttggtaatttaagc 11621131  T
Q  894 attatgatgatgcatgta 911  Q
     |||||||||||||||||    
T  11621132 gttatgatgatgcatgta 11621149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 501 - 588
Target Start/End: Original strand, 45161349 - 45161437
Alignment:
Q  501 ttttacaaggatgaaatccaaaac-ttttattttacagg-ggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||| | |||||||||| |||| ||||||||| ||||||| | |||||| ||||||||||||||| |||||||| ||||||||    
T  45161349 ttttacaaggacggaatccaaaacttttttttttacaggaggcaaaaccaaaagtgccctatattacagggg-taaaacactattaaccc 45161437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 507 - 589
Target Start/End: Complemental strand, 19272744 - 19272661
Alignment:
Q  507 aaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||| |||||||||||  | |||||||||||||  |||| || || || |||||||||||||||||||||||| |||||||||    
T  19272744 aaggacgaaatccaaaaaatatattttacagggggtaaaaccggaaatgacctatattacaggggataaaacactattaaccca 19272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 38127849 - 38127763
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||| |||||||||||  | |||||||||||||  |||| || || || ||||||||||||||| |||||||| ||||||||    
T  38127849 ttacaaggacgaaatccaaaaaatatattttacagggggtaaaaccggaaatgacctatattacagggggtaaaacactattaaccc 38127763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 478 - 570
Target Start/End: Original strand, 1904354 - 1904447
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| |||| |||| ||| ||| ||||||||| | |||||| |||||||||||||||    
T  1904354 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaattttttttcacagggggcaaaaccaaaagtgccctatattacagggg 1904447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 589
Target Start/End: Original strand, 5558449 - 5558510
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||| ||||   ||| || |||||||||||||||||||| |||||||||||||    
T  5558449 tattttacagggggaaaacaaaaaatgacctatattacaggggataaagcaccattaaccca 5558510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 9419586 - 9419501
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||| |||||    ||||||||||||| ||||  |||| || ||||||||||||||| |||||||  ||||||||    
T  9419586 ttacaaggatgaaattcaaaaaaaatattttacagggggaaaactgaaaatgacctatattacagggggtaaaacattattaaccc 9419501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 20182321 - 20182276
Alignment:
Q  531 tttacaggggcaaaatcgaaagtggcctatattacaggggataaaa 576  Q
    |||||||||| |||||||||| || |||||||||||||||||||||    
T  20182321 tttacagggggaaaatcgaaaatgacctatattacaggggataaaa 20182276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 29640823 - 29640762
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||| |||| | ||| || ||||||||||||||| |||| |||||||||||||    
T  29640823 tattttacagggggaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccca 29640762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 38936055 - 38935962
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacag-gggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| |||  |||| |||||||| |||||||| | |||||| |||||||||||||||    
T  38936055 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaatttttttttttacagtgggcaaaaccaaaagtgtcctatattacagggg 38935962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 14793312 - 14793252
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||  |||||  ||| || ||||||||||||||| |||||||||||||||||    
T  14793312 tattttacagggagaaaataaaaaatgacctatattacagggggtaaaacaccattaaccc 14793252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 22552565 - 22552505
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| ||||   ||| || ||||||||||||||| |||||||||||||||||    
T  22552565 tattttacagggggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 22552505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 24951964 - 24951904
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| | ||| || ||||||||||||||| |||| ||||||||||||    
T  24951964 tattttacagggggaaaaccaaaaatgacctatattacaggggttaaagcaccattaaccc 24951904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 553 - 585
Target Start/End: Complemental strand, 29966373 - 29966341
Alignment:
Q  553 tggcctatattacaggggataaaacaccattaa 585  Q
    |||||||||||||||||||||||||||||||||    
T  29966373 tggcctatattacaggggataaaacaccattaa 29966341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 39341353 - 39341412
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| | ||| || ||||||||||||||| |||||||||||||||||    
T  39341353 tattttacagggg-aaaaccaaaaatgacctatattacagggggtaaaacaccattaaccc 39341412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 45632603 - 45632543
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| ||||   ||| || ||||||||||||||| |||||||||||||||||    
T  45632603 tattttacagggggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 45632543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 528 - 587
Target Start/End: Complemental strand, 5558282 - 5558223
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaacc 587  Q
    |||||||||||||  ||| | ||| || ||||||||||||||| ||||||||||||||||    
T  5558282 tattttacaggggggaaaccaaaaatgacctatattacagggggtaaaacaccattaacc 5558223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 7576437 - 7576344
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| ||||    ||||||||||||| ||||| | |||||| |||||||||||||||    
T  7576437 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaatattttacagggggcaaaaccaaaagtgccctatattacagggg 7576344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 8214404 - 8214343
Alignment:
Q  528 tattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||||  |||||  ||| || ||||||||||||||| |||||||||||||||||    
T  8214404 tattttacaggggggaaaataaaaaatgacctatattacagggggtaaaacaccattaaccc 8214343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 16139088 - 16139173
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||  |||||    ||||||||||||| ||||   ||| || |||||||||||||||||||| ||| ||||||||    
T  16139088 ttacaaggatgaaagtcaaaaaaaatattttacagggggaaaacaaaaaatgacctatattacaggggataaagcactattaaccc 16139173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Original strand, 17688178 - 17688211
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  17688178 cctatattacagggggtaaaacaccattaaccca 17688211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Original strand, 31108608 - 31108641
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  31108608 cctatattacagggggtaaaacaccattaaccca 31108641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Complemental strand, 32596437 - 32596404
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    |||||||||||||||||||| |||||||||||||    
T  32596437 cctatattacaggggataaagcaccattaaccca 32596404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Original strand, 38470984 - 38471017
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  38470984 cctatattacagggggtaaaacaccattaaccca 38471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 44610987 - 44610926
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||| |||| | ||| |  ||||||||||||||| |||| |||||||||||||    
T  44610987 tattttacaggggaaaaaccaaaaataacctatattacagggggtaaagcaccattaaccca 44610926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 5e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 597 - 787
Target Start/End: Complemental strand, 16775848 - 16775656
Alignment:
Q  597 aagtccaatataaatttgtttcattccttcgtcatttcttaaccatcaattgggagtttcaaaattatgatcaagtgtnnnnnnn--gtgggttagggga 694  Q
    ||||||||||| |||||||| |||||| || |||||| |||| ||| | ||| |||||||||||| |||||||| |||         |||||| || |||    
T  16775848 aagtccaatatgaatttgttgcattccctcatcattttttaatcattagttgcgagtttcaaaatcatgatcaattgtaaaaaaaaggtgggtcagagga 16775749  T
Q  695 taacaattagtatttatgctaaaatcaattaaaagttattgaataatttacatactttttggttttcgagattttatttccattgaagataat 787  Q
    ||| |||||| |||| ||||||||||||||||||||||| | |||||||||||| |||||||||||  | | |||||||| ||||||||||||    
T  16775748 taaaaattagcatttgtgctaaaatcaattaaaagttatgggataatttacatattttttggtttttcacaatttatttcaattgaagataat 16775656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 800 - 911
Target Start/End: Complemental strand, 16759320 - 16759209
Alignment:
Q  800 atgttagactcaaatgtggatacatgtttcagccaccacattgtgctaatttaatttcttccgttagaccaaacctctcgttggtaattttagtattatg 899  Q
    ||||||||| ||||||||||||||| |||||||   |||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||| | ||||||    
T  16759320 atgttagacacaaatgtggatacatctttcagctgtcacgatgtgctaatttaatttcttccattagaccaaacttctcgttggtagttttggcattatg 16759221  T
Q  900 atgatgcatgta 911  Q
    ||||||||||||    
T  16759220 atgatgcatgta 16759209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 2873737 - 2873822
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||| |||||  | ||||||||||| | |||| ||||| || | ||||||||||||| |||||||| ||||||||    
T  2873737 ttacaaggatgaaattcaaaaaatatattttacaggaggaaaaccgaaaatgacttatattacagggggtaaaacactattaaccc 2873822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 483 - 570
Target Start/End: Original strand, 9768255 - 9768343
Alignment:
Q  483 atttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacagggg 570  Q
    ||||||||||||||||  ||||||||||| | |||| ||||   || ||||||||||| ||||||| |||||| |||||||||||||||    
T  9768255 atttttgaagaatcttgattttacaaggacggaatctaaaagaatttttttacaggggacaaaatcaaaagtgacctatattacagggg 9768343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 23428934 - 23428994
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  23428934 tattttacagggggaaaaccgaaaattacctatattacagggggtaaaacaccattaaccc 23428994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 30222059 - 30222144
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||| | |||||||||    ||||||||||||| |||| ||||| || ||||||||||||||| |||| ||| ||||||||    
T  30222059 ttacaaggacggaatccaaaaaaaatattttacagggggaaaaccgaaaatgacctatattacagggggtaaagcactattaaccc 30222144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 556 - 588
Target Start/End: Original strand, 38687536 - 38687568
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||||||||||||||||||||||||    
T  38687536 cctatattacaggggataaaacaccattaaccc 38687568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 556 - 587
Target Start/End: Original strand, 3448897 - 3448928
Alignment:
Q  556 cctatattacaggggataaaacaccattaacc 587  Q
    ||||||||||||||||||||||||||||||||    
T  3448897 cctatattacaggggataaaacaccattaacc 3448928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 589
Target Start/End: Complemental strand, 34845370 - 34845283
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacagg-ggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| |||||    ||||||||||| || |||| || || |||||||||||||||||| |||| ||| |||||||||    
T  34845370 ttacaaggatgaaattcaaaaaaaatattttacaggagggaaaaccggaaatggcctatattacaggggctaaagcactattaaccca 34845283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 530 - 569
Target Start/End: Complemental strand, 40701405 - 40701366
Alignment:
Q  530 ttttacaggggcaaaatcgaaagtggcctatattacaggg 569  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  40701405 ttttacaggggcaaaaacgaaagtgacctatattacaggg 40701366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 11105831 - 11105769
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattaca-ggggataaaacaccattaaccca 589  Q
    ||||||||||||| |||| | ||| || ||||||||||| ||||||||| |||||||||||||    
T  11105831 tattttacagggggaaaaccaaaaatgacctatattacagggggataaagcaccattaaccca 11105769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 18367087 - 18367025
Alignment:
Q  528 tattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    |||||||||||||  |||| ||||| || ||||||||||||||| |||| |||||||||||||    
T  18367087 tattttacaggggggaaaaccgaaaatgacctatattacagggggtaaagcaccattaaccca 18367025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 23389105 - 23389020
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||| |||||||||||   |||||||||| |||| |||| ||||| ||  |||||||||||||| |||||||| ||||||||    
T  23389105 ttacaaggacgaaatccaaaaaaattattttacagggggtaaaaccgaaaatgatctatattacagggg-taaaacacaattaaccc 23389020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 531 - 588
Target Start/End: Original strand, 21692605 - 21692662
Alignment:
Q  531 tttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||| |||| | ||| || ||||||||||||||| |||| ||||||||||||    
T  21692605 tttacagggggaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccc 21692662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 589
Target Start/End: Complemental strand, 23428796 - 23428735
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||| |||| || || || ||||||||||||||| |||| |||| ||||||||    
T  23428796 tattttacagggggaaaaccgcaaatgacctatattacagggggtaaagcacctttaaccca 23428735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 27163228 - 27163135
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| ||||   || ||||||||||| ||||| | |||||| |||||||||||||||    
T  27163228 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaatttttttacaggggccaaaaccaaaagtgccctatattacagggg 27163135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 39808759 - 39808666
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  |||||||||||   |||| |||  |||| ||||||||||| ||||| | |||||| |||||||||||||||    
T  39808759 ggggcaatcttgaagaatcttcattttacaaggacagaatctaaatttttttttttacagggggcaaaaccaaaagtgccctatattacagggg 39808666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 8e-24; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 483 - 584
Target Start/End: Complemental strand, 52264550 - 52264449
Alignment:
Q  483 atttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccat 582  Q
    |||| |||||||||||  ||||||||||| | |||| ||||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||| ||    
T  52264550 atttctgaagaatcttgattttacaaggacggaatctaaaactttttttttacaggggcaaaatcaaaagtggcctatattacggggggtaaaacactat 52264451  T
Q  583 ta 584  Q
    ||    
T  52264450 ta 52264449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 3652357 - 3652271
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacag-gggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||| |||||||||||  | |||||||||| ||| ||||||| || || |||| |||||||||| |||||||| ||||||||    
T  3652357 ttacaaggacgaaatccaaaaaatatattttacagagggtaaaatcggaaatgacctaaattacagggggtaaaacactattaaccc 3652271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 527 - 589
Target Start/End: Complemental strand, 22451994 - 22451932
Alignment:
Q  527 ttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    |||||||||||||| ||||   ||| || ||||||||||||||| ||||||||||||||||||    
T  22451994 ttattttacagggggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccca 22451932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 526 - 588
Target Start/End: Complemental strand, 46360750 - 46360688
Alignment:
Q  526 tttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||| ||||   ||| || ||||||||||||||| |||||||||||||||||    
T  46360750 tttattttacagggggaaaacaaaaaatgacctatattacaggggctaaaacaccattaaccc 46360688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 28292113 - 28292053
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| ||||   ||| || ||||||||||||||| |||||||||||||||||    
T  28292113 tattttacagggggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 28292053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 36405850 - 36405910
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| | ||| || ||||||||||||||| |||| ||||||||||||    
T  36405850 tattttacaggggaaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccc 36405910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 46088343 - 46088407
Alignment:
Q  507 aaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacagggga 571  Q
    ||||| |||||||||||  ||||||||||||||| |||| ||||| ||  |||||||||||||||    
T  46088343 aaggacgaaatccaaaaaatttattttacagggggaaaaccgaaaatgaactatattacagggga 46088407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 478 - 588
Target Start/End: Complemental strand, 14183722 - 14183611
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacag-gggcaaaatcgaaagtggcctatattacaggggataaaa 576  Q
    |||||| || |||||||||||  |||||| |||| |||||| |||  | || |||||||| | |||||| | |||||| ||||||||| ||||| |||||    
T  14183722 ggggcaattatgaagaatcttgattttacgaggacgaaatctaaatttatttttttacagagagcaaaaccaaaagtgccctatattagagggggtaaaa 14183623  T
Q  577 caccattaaccc 588  Q
    ||| ||||||||    
T  14183622 cactattaaccc 14183611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 501 - 554
Target Start/End: Complemental strand, 21023084 - 21023030
Alignment:
Q  501 ttttacaaggatgaaatccaaaacttttattttac-aggggcaaaatcgaaagtg 554  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||| | ||||||    
T  21023084 ttttacaaggacggaatccaaaacttttattttacaaggggcaaaaccaaaagtg 21023030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 13032948 - 13032887
Alignment:
Q  528 tattttacaggg-gcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||| | |||| | ||| || ||||||||||||||| |||||||||||||||||    
T  13032948 tattttacagggaggaaaaccaaaaatgacctatattacagggggtaaaacaccattaaccc 13032887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 13910684 - 13910623
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattaca-ggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| | ||| || ||||||||||| |||| |||||||||||||||||    
T  13910684 tattttacagggggaaaaccaaaaatgacctatattacaagggggtaaaacaccattaaccc 13910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 506 - 579
Target Start/End: Original strand, 14946249 - 14946322
Alignment:
Q  506 caaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacac 579  Q
    |||||||||||| |||||   ||| |||||||||  |||||||||| |  ||||||||||||||| ||||||||    
T  14946249 caaggatgaaattcaaaaaaattagtttacagggagaaaatcgaaaataacctatattacagggggtaaaacac 14946322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 20514716 - 20514655
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacag-gggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| | ||| || |||||||||||| ||| |||||||||||||||||    
T  20514716 tattttacagggggaaaaccaaaaatgacctatattacagaggggtaaaacaccattaaccc 20514655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Complemental strand, 34318437 - 34318404
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  34318437 cctatattacagggggtaaaacaccattaaccca 34318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 34740000 - 34739907
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| ||||   || ||||||||||| ||||| | |||||| |||||||||||||||    
T  34740000 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaatttttttacaggggccaaaaccaaaagtgccctatattacagggg 34739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Complemental strand, 51902078 - 51902045
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  51902078 cctatattacagggggtaaaacaccattaaccca 51902045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 488 - 588
Target Start/End: Complemental strand, 25453431 - 25453332
Alignment:
Q  488 tgaagaatcttacttttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaacc 587  Q
    |||||||||||  ||||||||||| |||||||||||||||| ||||| ||||| |||| | |||||| | | |||||||||| ||||||||| |||||||    
T  25453431 tgaagaatctttattttacaaggacgaaatccaaaactttt-ttttataggggtaaaaccaaaagtgacatgtattacagggaataaaacactattaacc 25453333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 483 - 588
Target Start/End: Original strand, 26888408 - 26888514
Alignment:
Q  483 atttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacaggggataaaacacca 581  Q
    |||||||||||||||| |||||||||||| |||||| ||||    ||||||||| ||||||||| | |||||| ||||||||| || || |||||||| |    
T  26888408 atttttgaagaatctttcttttacaaggacgaaatctaaaaaaaatattttacagggggcaaaaccaaaagtgacctatattatagagggtaaaacacta 26888507  T
Q  582 ttaaccc 588  Q
    |||||||    
T  26888508 ttaaccc 26888514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 503 - 584
Target Start/End: Original strand, 8861494 - 8861576
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacagg-ggcaaaatcgaaagtggcctatattacaggggataaaacaccatta 584  Q
    ||||||||| |||||||||||  | ||||||||||| || ||||||| || || ||||||||||||||| |||||||| ||||    
T  8861494 ttacaaggacgaaatccaaaaaatatattttacaggaggtaaaatcggaaatgacctatattacagggggtaaaacactatta 8861576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 25962888 - 25962802
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||| |||||||||||    |||||||||||||  |||| ||||| || ||||||||||||||| |||||||| ||||||||    
T  25962888 ttacaaggacgaaatccaaaaaaaatattttacagggggtaaaaccgaaaatgacctatattacagggggtaaaacactattaaccc 25962802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 31312742 - 31312828
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacagg-ggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||| | ||||||||||  |||| ||||||||| || |||| ||||| || ||||||||||||||| |||||||| ||||||||    
T  31312742 ttacaagtacgaaatccaaatttttttttttacaggaggtaaaaccgaaaatgacctatattacagggggtaaaacactattaaccc 31312828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 488 - 568
Target Start/End: Complemental strand, 40434088 - 40434011
Alignment:
Q  488 tgaagaatcttacttttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacagg 568  Q
    |||||||||||  ||||||||||| | |||| ||   |||| |||||||||||||||||| |||||| |||||||||||||    
T  40434088 tgaagaatctttattttacaaggacggaatctaa---tttttttttacaggggcaaaatcaaaagtgccctatattacagg 40434011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 478 - 570
Target Start/End: Original strand, 15616445 - 15616538
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| |||  |||| ||||||| ||||||||| | |||||| |||||||||||||||    
T  15616445 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaatttttttttttacagggggcaaaaccaaaagtgtcctatattacagggg 15616538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 29691047 - 29690962
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||| || |||||||||||  | ||||||||||||| |||| ||||| || ||||||||||| ||| | |||||| ||||||||    
T  29691047 ttacaatgacgaaatccaaaaaatatattttacaggggtaaaaccgaaaatgacctatattacaaggggtgaaacactattaaccc 29690962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 37082246 - 37082331
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||| || ||||||||||||   ||||||||||||| |||| || || |  ||||||||||||||| |||||||| ||||||||    
T  37082246 ttacaatgacgaaatccaaaacaaatattttacaggggtaaaaccggaaattacctatattacagggggtaaaacactattaaccc 37082331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 478 - 565
Target Start/End: Complemental strand, 21775573 - 21775485
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttac-aggggcaaaatcgaaagtggcctatattac 565  Q
    |||||| | ||||||||||||  ||||||||||| | |||| |||| |||| |||||| |||||||||| | |||||| ||||||||||    
T  21775573 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaaattttttttttacaaggggcaaaaccaaaagtgccctatattac 21775485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 503 - 589
Target Start/End: Original strand, 22756353 - 22756441
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattaca-ggggataaaacaccattaaccca 589  Q
    ||||||||| |||||||||||  | ||||||||| |||| |||| ||||| || ||||||||||| |||| |||||||| |||||||||    
T  22756353 ttacaaggacgaaatccaaaaaatatattttacagggggtaaaaccgaaaatgacctatattacaggggggtaaaacactattaaccca 22756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 584
Target Start/End: Complemental strand, 41185002 - 41184946
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccatta 584  Q
    ||||||||||||| |||||||||| || ||||||||||| ||| |||||||| ||||    
T  41185002 tattttacagggggaaaatcgaaaatgacctatattacatggggtaaaacactatta 41184946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 478 - 575
Target Start/End: Original strand, 15061769 - 15061867
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacaggggataaa 575  Q
    |||||| | ||||||||||||  ||||||||||| | |||| |||  | || ||||||||||| ||||| | |||||| ||||||||||||||| ||||    
T  15061769 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaatttatttttttacagggggcaaaaccaaaagtgccctatattacagggggtaaa 15061867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 501 - 570
Target Start/End: Original strand, 35600507 - 35600577
Alignment:
Q  501 ttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||||||||  ||||| |||| |||| ||||||| ||||||||| | |||||| |||||||||||||||    
T  35600507 ttttacaaggaccaaatctaaaaatttttttttacaaggggcaaaaccaaaagtgacctatattacagggg 35600577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 3214839 - 3214900
Alignment:
Q  528 tattttacaggggcaaaatc-gaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| | | ||||| ||||||||||||||| ||||||||| |||||||    
T  3214839 tattttacagggggaaaaaccggaagtgacctatattacagggggtaaaacacctttaaccc 3214900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 529 - 589
Target Start/End: Original strand, 25088863 - 25088924
Alignment:
Q  529 attttacaggg-gcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||| | |||| |||||||| ||||||||||| ||| |||||||| |||||||||    
T  25088863 attttacagggtggaaaaccgaaagtgacctatattacaaggggtaaaacactattaaccca 25088924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 529 - 589
Target Start/End: Original strand, 25146832 - 25146893
Alignment:
Q  529 attttacaggg-gcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||| | |||| |||||||| ||||||||||| ||| |||||||| |||||||||    
T  25146832 attttacagggtggaaaaccgaaagtgacctatattacaaggggtaaaacactattaaccca 25146893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 587
Target Start/End: Original strand, 37217492 - 37217576
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaacc 587  Q
    ||||||||| |||||||||||    ||||||||| |||| ||||||| || || ||||||||||||||| |||||||| |||||||    
T  37217492 ttacaaggacgaaatccaaaa-aaatattttacagggggtaaaatcggaactgacctatattacagggggtaaaacactattaacc 37217576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 503 - 586
Target Start/End: Complemental strand, 332150 - 332067
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaac 586  Q
    ||||||||| |||||||||||    ||||||||||||| |||| ||||| || ||||||||||||||| |||||||| ||||||    
T  332150 ttacaaggacgaaatccaaaaaaaatattttacagggggaaaaccgaaaatgacctatattacagggggtaaaacactattaac 332067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 503 - 589
Target Start/End: Complemental strand, 35158269 - 35158182
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||| |||||||||||  | | |||||||||||  |||| ||||| || |||||||||||||||||||||||| |||||||||    
T  35158269 ttacaaggacgaaatccaaaaaatattttttacagggggtaaaaccgaaaatgacctatattacaggggataaaacactattaaccca 35158182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 21444154 - 21444240
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||| ||||||||||| |  |||||||||||||  |||| ||||| || ||||||||||||||| |||||||| ||||||||    
T  21444154 ttacaaggacgaaatccaaaaataatattttacagggggtaaaaccgaaaatgacctatattacagggggtaaaacactattaaccc 21444240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 24478084 - 24478024
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| || || || ||||||||||||||| |||||||| ||||||||    
T  24478084 tattttacaggggaaaaaccggaaatgacctatattacagggggtaaaacactattaaccc 24478024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 589
Target Start/End: Complemental strand, 36374232 - 36374146
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacagggg-caaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||| |||||||||||    |||||||||||||  |||||||||| || ||||||||| ||||| |||||||| |||||||||    
T  36374232 ttacaaggacgaaatccaaaaaaaatattttacaggggataaaatcgaaaatgacctatattatagggg-taaaacactattaaccca 36374146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 588
Target Start/End: Original strand, 442823 - 442909
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggg-gcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||| |||||    ||||||||| || | ||||  |||| |||||||||||||||||| |||||||| ||||||||    
T  442823 ttacaaggatgaaattcaaaagaaatattttacaaggaggaaaactgaaaatggcctatattacagggggtaaaacactattaaccc 442909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 478 - 588
Target Start/End: Original strand, 1831926 - 1832036
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaac 577  Q
    |||||| | ||||||||||||  ||||||||||||  |||| ||||     | |||||||||| |||||| |||||| ||||||||||||||| |||| |    
T  1831926 ggggcaatcttgaagaatctttattttacaaggatagaatctaaaaaaaaaaatttacagggggaaaatcaaaagtgccctatattacagggggtaaagc 1832025  T
Q  578 accattaaccc 588  Q
     | ||||||||    
T  1832026 cctattaaccc 1832036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 12005350 - 12005264
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||| |||||    ||||||||| |||| ||||  | || |||||||||||||||||| |||||||| ||||||||    
T  12005350 ttacaaggatgaaattcaaaagaaatattttacaagggggaaaactggaaatggcctatattacagggggtaaaacactattaaccc 12005264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 478 - 567
Target Start/End: Original strand, 17764645 - 17764735
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacag 567  Q
    |||||| | ||||||||||||  ||||||||||| | |||| ||||  ||| ||||||| ||||||||| | |||||| ||||||||||||    
T  17764645 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaattttttttacagggggcaaaaccaaaagtgccctatattacag 17764735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 20164434 - 20164480
Alignment:
Q  542 aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||| || ||||||||||||||| |||||||| ||||||||    
T  20164434 aaaatcgaaaatgacctatattacagggggtaaaacactattaaccc 20164480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 38192681 - 38192615
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggg 569  Q
    ||||||||| |||||||||||  | ||||||||||||| |||| ||||| || | ||||||||||||    
T  38192681 ttacaaggacgaaatccaaaaaatatattttacagggggaaaaccgaaaatgacatatattacaggg 38192615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 19336104 - 19336043
Alignment:
Q  528 tattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||||  |||| | ||| || ||||||||||||||| |||||||||||||||||    
T  19336104 tattttacaggggggaaaaccaaaaatgacctatattacagggggtaaaacaccattaaccc 19336043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 502 - 571
Target Start/End: Complemental strand, 38092122 - 38092053
Alignment:
Q  502 tttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacagggga 571  Q
    ||||||||||   ||||||||| | || |||| || |||||||| |||||||| ||||||||||||||||    
T  38092122 tttacaaggaccgaatccaaaaatgtttttttgcaagggcaaaaccgaaagtgacctatattacagggga 38092053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 42509034 - 42509095
Alignment:
Q  528 tattttacagggg-caaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| ||||| | |||||| |||||||||||| || |||||||| ||||||||    
T  42509034 tattttacagggggcaaaaccaaaagtgccctatattacagagggtaaaacactattaaccc 42509095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 18591206 - 18591121
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||| |||||||| ||||||   ||||||||||||| |||| || || || ||||||||| |||||||||||||| ||||||||    
T  18591206 ttacaatgatgaaattcaaaacaaatattttacagggggaaaaccggaaatgacctatattataggggataaaacactattaaccc 18591121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 527 - 587
Target Start/End: Complemental strand, 14925024 - 14924965
Alignment:
Q  527 ttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaacc 587  Q
    |||||||||||||  |||||||||| || ||||||||||||||| ||||||||||||||||    
T  14925024 ttattttacagggagaaaatcgaaa-tgacctatattacagggggtaaaacaccattaacc 14924965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 529 - 588
Target Start/End: Original strand, 14985306 - 14985365
Alignment:
Q  529 attttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||  ||||||||| || | ||||||||||||| |||||||||||||||||    
T  14985306 attttacaggggagaaatcgaaaatgacttatattacagggggtaaaacaccattaaccc 14985365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 10545892 - 10545831
Alignment:
Q  528 tattttacaggggcaaaa-tcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| |||| |||||| || ||||||||||||||| |||||||| ||||||||    
T  10545892 tattttacagggggaaaaatcgaaaatgacctatattacagggggtaaaacactattaaccc 10545831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 24234441 - 24234348
Alignment:
Q  478 ggggcatttttgaagaatcttacttttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacagggg 570  Q
    |||||| | ||||||||||||  ||||||||||| | |||| |||  |||| ||||||| ||||||||| | |||||| |||||||||||||||    
T  24234441 ggggcaatcttgaagaatcttcattttacaaggacggaatctaaatttttttttttacagggggcaaaaccaaaagtgtcctatattacagggg 24234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 33552766 - 33552827
Alignment:
Q  528 tattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||||  |||||  ||| || |||||||||||||||||||||||||||||||||    
T  33552766 tattttacaggggagaaaataaaaaatgacctatattacaggggataaaacaccattaaccc 33552827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 549 - 588
Target Start/End: Original strand, 11425786 - 11425825
Alignment:
Q  549 aaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  11425786 aaagtgccctatattacaggggataaaacactattaaccc 11425825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 22253280 - 22253331
Alignment:
Q  537 ggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||||||||||||||||||  |||| |||||||  ||||||||    
T  22253280 ggggcaaaatcgaaagtggcctatattaatgggggtaaaacattattaaccc 22253331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 488 - 589
Target Start/End: Complemental strand, 28583649 - 28583546
Alignment:
Q  488 tgaagaatcttacttttacaaggatgaaatcca-aaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaa 585  Q
    |||||||||||||||||| ||||||  ||||||     |||| |||||||||||| |||| | |||||| ||||||||||| ||| |||||||| |||||    
T  28583649 tgaagaatcttacttttataaggatcgaatccattttttttttttttacaggggcaaaaaccaaaagtgccctatattacacggggtaaaacactattaa 28583550  T
Q  586 ccca 589  Q
    ||||    
T  28583549 ccca 28583546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 2033109 - 2033155
Alignment:
Q  542 aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||| || ||||||||| ||||| |||||||||||||||||    
T  2033109 aaaatcgaaaatgacctatattatagggggtaaaacaccattaaccc 2033155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 528 - 586
Target Start/End: Complemental strand, 14974627 - 14974569
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaac 586  Q
    ||||||||||||| |||| | |||  | |||||||||| ||||||||||||||||||||    
T  14974627 tattttacaggggaaaaaccaaaaaggacctatattacgggggataaaacaccattaac 14974569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 589
Target Start/End: Complemental strand, 2181349 - 2181316
Alignment:
Q  556 cctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||||| ||||||||||||||||||    
T  2181349 cctatattacagggggtaaaacaccattaaccca 2181316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 548 - 585
Target Start/End: Complemental strand, 5702095 - 5702058
Alignment:
Q  548 gaaagtggcctatattacaggggataaaacaccattaa 585  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  5702095 gaaagtgacctatattacaggagataaaacaccattaa 5702058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 505 - 589
Target Start/End: Complemental strand, 10343582 - 10343498
Alignment:
Q  505 acaaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    |||||||  ||||||||||  | |||||||||||||  ||||||| || || ||||||||||||||| |||||||| |||||||||    
T  10343582 acaaggacaaaatccaaaaaatatattttacagggggtaaaatcggaaatgacctatattacagggg-taaaacactattaaccca 10343498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 529 - 586
Target Start/End: Original strand, 10546177 - 10546234
Alignment:
Q  529 attttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaac 586  Q
    |||||||||||| |||| ||||| || |||||||||||| || |||||||| ||||||    
T  10546177 attttacaggggaaaaaccgaaaatgacctatattacagagggtaaaacactattaac 10546234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 589
Target Start/End: Original strand, 33352612 - 33352673
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||||||| ||||   ||| || ||||||||||||||| |||| |||||||||||||    
T  33352612 tattttacagggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccca 33352673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 174600 - 174660
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| ||||||| || || |||||||||| |||| |||||||||||||||||    
T  174600 tattttacagggggaaaatcggaaatgacctatattactgggggtaaaacaccattaaccc 174660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 503 - 589
Target Start/End: Complemental strand, 212599 - 212512
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttaca-ggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||| ||||||||||     ||||||||| |||| |||||||||| || ||||||||||||||| |||||||| |||||||||    
T  212599 ttacaaggacgaaatccaaataaaatattttacacggggtaaaatcgaaaatgacctatattacagggggtaaaacactattaaccca 212512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 503 - 588
Target Start/End: Complemental strand, 18728 - 18643
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||| |||||||| |||||    ||||||| ||||| |||||||||| || ||||||||||||| | |||||||| ||||||||    
T  18728 ttacaatgatgaaattcaaaaaaaatattttataggggaaaaatcgaaaatgacctatattacaggaggtaaaacactattaaccc 18643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 8146 - 8101
Alignment:
Q  525 ttttattttacaggggcaaaatcgaaagtggcctatattacagggg 570  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||    
T  8146 ttttattttacaggggcaaaaccaaaagtgtcctatattacagggg 8101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 15728 - 15683
Alignment:
Q  525 ttttattttacaggggcaaaatcgaaagtggcctatattacagggg 570  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||    
T  15728 ttttattttacaggggcaaaaccaaaagtgtcctatattacagggg 15683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 25680 - 25635
Alignment:
Q  525 ttttattttacaggggcaaaatcgaaagtggcctatattacagggg 570  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||    
T  25680 ttttattttacaggggcaaaaccaaaagtgtcctatattacagggg 25635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 29680 - 29740
Alignment:
Q  528 tattttacaggggcaaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    ||||||||||||| ||||   ||| || ||||||||||||||| |||||||||||||||||    
T  29680 tattttacagggggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 29740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 589
Target Start/End: Original strand, 63320 - 63407
Alignment:
Q  503 ttacaaggatgaaatccaaaacttttattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccca 589  Q
    ||||||||| |||||||||||    |||||||||||||  |||| || || || ||||||||||||||| |||||||| |||||||||    
T  63320 ttacaaggacgaaatccaaaaaaaatattttacaggggataaaaccggaaatgacctatattacagggggtaaaacactattaaccca 63407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 14443 - 14504
Alignment:
Q  528 tattttacaggggc-aaaatcgaaagtggcctatattacaggggataaaacaccattaaccc 588  Q
    |||||||||||||  |||||| ||| || ||||||||||||||| |||| ||||||||||||    
T  14443 tattttacaggggggaaaatcaaaaatgacctatattacagggggtaaagcaccattaaccc 14504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University