View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5910-Insertion-4 (Length: 984)

Name: NF5910-Insertion-4
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5910-Insertion-4
NF5910-Insertion-4
[»] chr2 (5 HSPs)
chr2 (294-982)||(35590174-35590875)
chr2 (9-310)||(35590885-35591186)
chr2 (693-748)||(41300521-41300576)
chr2 (815-861)||(37738058-37738104)
chr2 (693-724)||(45130944-45130975)
[»] chr4 (9 HSPs)
chr4 (815-937)||(30972361-30972488)
chr4 (695-767)||(21204750-21204822)
chr4 (699-767)||(27269856-27269924)
chr4 (815-939)||(27269979-27270108)
chr4 (693-767)||(41995849-41995923)
chr4 (820-925)||(48336971-48337081)
chr4 (815-939)||(21204871-21205000)
chr4 (704-768)||(48337125-48337189)
chr4 (697-747)||(33435967-33436017)
[»] chr7 (8 HSPs)
chr7 (812-941)||(27076567-27076702)
chr7 (812-941)||(27201599-27201734)
chr7 (812-925)||(40347990-40348108)
chr7 (697-786)||(27076729-27076818)
chr7 (697-786)||(27201483-27201572)
chr7 (690-725)||(29374549-29374584)
chr7 (693-724)||(43026160-43026191)
chr7 (821-862)||(42017866-42017907)
[»] chr6 (5 HSPs)
chr6 (815-982)||(9907109-9907284)
chr6 (823-938)||(7824118-7824238)
chr6 (815-938)||(22469420-22469548)
chr6 (693-725)||(14215867-14215899)
chr6 (690-724)||(5673382-5673416)
[»] chr1 (3 HSPs)
chr1 (815-934)||(4889452-4889576)
chr1 (815-939)||(34703455-34703584)
chr1 (691-724)||(30428455-30428488)
[»] chr8 (2 HSPs)
chr8 (693-767)||(21524007-21524081)
chr8 (858-903)||(21523894-21523939)
[»] chr3 (3 HSPs)
chr3 (858-939)||(25845645-25845727)
chr3 (818-938)||(13043347-13043472)
chr3 (818-938)||(13051424-13051549)
[»] chr5 (2 HSPs)
chr5 (844-937)||(39839903-39840001)
chr5 (693-767)||(39840084-39840158)
[»] scaffold0204 (2 HSPs)
scaffold0204 (820-925)||(24493-24603)
scaffold0204 (704-768)||(24647-24711)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 294 - 982
Target Start/End: Complemental strand, 35590875 - 35590174
Alignment:
Q  294 aaaaagttgtacgtggttcaatgaaattatgcattggttggcgattagattcccaacttcctacttaccacatggccctttcttctaaacaaacaaacct 393  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35590875 aaaaagttgtatgtggttcaatgaaattatgcattagttggcgattagattcccaacttcctacttaccacatggccctttcttctaaacaaacaaacct 35590776  T
Q  394 gaaccagtacttttattagttttataatcacttaaaagagannnnnnnnnnn-aatatggaacatcttgataaatgctctaccgtggataatacttnnnn 492  Q
    ||||||||||||||||||||||||||||||||||||| |||            |||||||||||||||||||||||||||||||||||||||||||        
T  35590775 gaaccagtacttttattagttttataatcacttaaaacagaatatatttttttaatatggaacatcttgataaatgctctaccgtggataatacttaaaa 35590676  T
Q  493 nnntgtttaaaagtctaactacgttgtagtcgtctcttgatagtaaatgttgatagta--cttattatttttgacgattgagatagtgatttaatggata 590  Q
       |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  || |||||||| ||||||||||||||||||||||||||||    
T  35590675 aaatgtttaaaagtctaactacgttgtagtcatctcttgatagtaaatgttgatagtatactcattatttt-gacgattgagatagtgatttaatggata 35590577  T
Q  591 ccaatttgattgaaataacggaaagtgattatgtaattcgtattgaaccaacaataatcaaatcatcgtgttaggcttttagtagtaa---nnnnnnnnn 687  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||                
T  35590576 ccaatttgatcgaaataatggaaaatgattatgtaattcgtattgaaccaacaataattaaatcaccgtgttaggcttttagcagtaaattttttttttt 35590477  T
Q  688 nnaaaaggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtttgcaaatatttacaagggn 787  Q
      || |||||||||||||||||||||||||||||||||||||  ||||| | |||||||| ||||||||||||||||||| ||||||||||||||||||     
T  35590476 tgaagaggctaaaatgaattatattaccacatcaaaagattcaaccttgcacaaggtatgccagagagaaacaccagagtctgcaaatatttacaaggga 35590377  T
Q  788 nnnnnnnnnnnnnnnnnnnnnnnngccaataactattagcctatgcccaaaatagagaagggactaagcc----accatgatagttgaagggaatagatg 883  Q
                            |||| ||||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||||| | | |    
T  35590376 aacaaaaaatagtgaaaacagaaagccattaactattagcctatgcccaaaatagagaaggggctaagccaccaaccatgatagttgaagggaagacacg 35590277  T
Q  884 gatacttcgccttcaacca-ctgaaagtcagcgacttaattttgtcaaccacctgaata--taagcatt-tttgacattgaaaaacctgttatttctttc 979  Q
    ||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||||  | |||||| |||| |||||||||||||||||||||||||    
T  35590276 gatacttcgccttcagccacctgaaagtcagcaacttaattttatcaaccacctgaataattgagcattctttgccattgaaaaacctgttatttctttc 35590177  T
Q  980 ttt 982  Q
    |||    
T  35590176 ttt 35590174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 35591186 - 35590885
Alignment:
Q  9 cagttagaggggttttcttcacttttctatagcttgaattttaattttgagtattaaaatattaactataaccgggagcagttatttggcttttgttttg 108  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35591186 cagttagaggggtcttcttcacttttctatagcttgaattttaattttgagtattaaaatattaactataaccgggagtagttatttggcttttgttttg 35591087  T
Q  109 tggatctatcatgcaatatatgtatgtattgatgtattaatcacctctgtatgtgtatcagaaatttgaaatcgccatgggagcataaaataatatgagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35591086 tggatctatcatgcaatatatgtatgtattgatgtattaatcacctctgtatgtgtatcagaaatttgaaatcgccatgggagcataaaataatatgagg 35590987  T
Q  209 tgaatatatttaagtacatttgatcgatgcattttccctttacgagaaaaaggtataattcgatgcctttcatatttatagaaataaaaagttgtacgtg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35590986 tgaatatatttaagtacatttgatcgatgcattttccctttacgagaaaaaggtataattcgatgcctttcatatttatagaaataaaaagttgtatgtg 35590887  T
Q  309 gt 310  Q
    ||    
T  35590886 gt 35590885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 693 - 748
Target Start/End: Original strand, 41300521 - 41300576
Alignment:
Q  693 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgt 748  Q
    ||||||||||||||||||||||||||||||||||| |||||| | | |||||||||    
T  41300521 aggctaaaatgaattatattaccacatcaaaagatcctccctagcacaaggtatgt 41300576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 815 - 861
Target Start/End: Original strand, 37738058 - 37738104
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagccacca 861  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||    
T  37738058 aataactattagcctatgcccaaaatggtgaacggactaagccacca 37738104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 724
Target Start/End: Original strand, 45130944 - 45130975
Alignment:
Q  693 aggctaaaatgaattatattaccacatcaaaa 724  Q
    ||||||||||||||||||||||||||||||||    
T  45130944 aggctaaaatgaattatattaccacatcaaaa 45130975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 7e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 815 - 937
Target Start/End: Original strand, 30972361 - 30972488
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagcca----ccatgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaag 909  Q
    |||||||||||||||||||| ||||||| |||  ||||||||||    ||||||||||||||||||| ||| ||| | |||||||||| |||| ||||||    
T  30972361 aataactattagcctatgccaaaaatagtgaaatgactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaag 30972460  T
Q  910 tcagcgacttaattttgtcaaccacctg 937  Q
    |||||||||||||||| |||||||||||    
T  30972461 tcagcgacttaattttatcaaccacctg 30972488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 695 - 767
Target Start/End: Original strand, 21204750 - 21204822
Alignment:
Q  695 gctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 767  Q
    ||||||||||| |||||||||||||||||| || |||||| | | |||||||||||||||||||||| |||||    
T  21204750 gctaaaatgaaatatattaccacatcaaaaaatcctccctagcacaaggtatgtcagagagaaacactagagt 21204822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 699 - 767
Target Start/End: Original strand, 27269856 - 27269924
Alignment:
Q  699 aaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 767  Q
    ||||||| ||||| ||||||||||||  |||||||| |||||||||||| ||||||||||||| |||||    
T  27269856 aaatgaaatatatcaccacatcaaaaagttctccctagtataaggtatgccagagagaaacactagagt 27269924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 815 - 939
Target Start/End: Original strand, 27269979 - 27270108
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagcc----accatgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaag 909  Q
    ||||||||||||| |||| ||||||| | ||| ||||||||||    ||||||||| ||||||||||  || ||| | ||||||||||||||| ||||||    
T  27269979 aataactattagcatatgtccaaaattgtgaatggactaagccaccaaccatgataattgaagggaagtgaaggaaatttcgccttcaaccacatgaaag 27270078  T
Q  910 tcagcgacttaattttgtcaaccacctgaa 939  Q
    | |  ||||||||||| |||||||| ||||    
T  27270079 tgattgacttaattttatcaaccacgtgaa 27270108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 693 - 767
Target Start/End: Original strand, 41995849 - 41995923
Alignment:
Q  693 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 767  Q
    |||||||||||||||||||||||||||||||||||  ||||| | |||||||||  |||||| | ||| ||||||    
T  41995849 aggctaaaatgaattatattaccacatcaaaagatcttccctagcataaggtataccagagaaagacatcagagt 41995923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 925
Target Start/End: Complemental strand, 48337081 - 48336971
Alignment:
Q  820 ctattagcctatgcccaaaatagagaagggactaagccacca----tgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaagtcagc 914  Q
    ||||||||||||||| || |||| ||| | ||||| ||||||    ||||  |||||||||| ||| ||| | ||||||||||||||| ||||||| |||    
T  48337081 ctattagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagc 48336982  T
Q  915 gacttaatttt 925  Q
    |||||||||||    
T  48336981 gacttaatttt 48336971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 939
Target Start/End: Original strand, 21204871 - 21205000
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagcc----accatgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaag 909  Q
    |||||||||||||||||| ||||||| | ||| | ||||||||    ||||||||| ||||||||||  || | | | ||||| ||||||||| ||||||    
T  21204871 aataactattagcctatgtccaaaattgtgaatgaactaagccaccaaccatgataattgaagggaagtgaagaaaatttcgcattcaaccacatgaaag 21204970  T
Q  910 tcagcgacttaattttgtcaaccacctgaa 939  Q
    | |  ||||||||||| ||||||| |||||    
T  21204971 tgattgacttaattttatcaaccatctgaa 21205000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 704 - 768
Target Start/End: Complemental strand, 48337189 - 48337125
Alignment:
Q  704 aattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtt 768  Q
    |||||||||||||||||||||| |||||||| | |||||| ||| ||  || |||||||||||||    
T  48337189 aattatattaccacatcaaaaggttctccctagcataaggcatgccaaggaaaaacaccagagtt 48337125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 33436017 - 33435967
Alignment:
Q  697 taaaatgaattatattaccacatcaaaagattctcccttgtataaggtatg 747  Q
    ||||||||||||||||||||||||||||  |  ||||| ||||||||||||    
T  33436017 taaaatgaattatattaccacatcaaaatgtcttccctagtataaggtatg 33435967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 812 - 941
Target Start/End: Complemental strand, 27076702 - 27076567
Alignment:
Q  812 gccaataactattagcctatgcccaaaatagagaa-gggactaagcc----accatgatagttgaagggaatagatggatacttcgccttcaacca-ctg 905  Q
    ||||||||||||||||||||| || | |||| ||| | | |||||||    |||||||||||||||||||||||||||| ||||||||||| |||| |||    
T  27076702 gccaataactattagcctatgtccgatatagtgaatgaggctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctaccacctg 27076603  T
Q  906 aaagtcagcgacttaattttgtcaaccacctgaata 941  Q
    ||||||||| ||| |||||| |||||||| ||||||    
T  27076602 aaagtcagctactcaattttatcaaccacttgaata 27076567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 812 - 941
Target Start/End: Original strand, 27201599 - 27201734
Alignment:
Q  812 gccaataactattagcctatgcccaaaatagagaa-gggactaagcc----accatgatagttgaagggaatagatggatacttcgccttcaacca-ctg 905  Q
    ||||||||||||||||||||| || | |||| ||| | | |||||||    |||||||||||||||||||||||||||| ||||||||||| |||| |||    
T  27201599 gccaataactattagcctatgtccgatatagtgaatgaggctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctaccacctg 27201698  T
Q  906 aaagtcagcgacttaattttgtcaaccacctgaata 941  Q
    ||||||||| ||| |||||| |||||||| ||||||    
T  27201699 aaagtcagctactcaattttatcaaccacttgaata 27201734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 812 - 925
Target Start/End: Complemental strand, 40348108 - 40347990
Alignment:
Q  812 gccaataactattagcctatgcccaaaatagagaagggactaagcca----ccatgatagttgaagggaatagatggatacttcgccttcaaccac-tga 906  Q
    ||||||||||||||| ||||| |||| |||| ||| ||  |||||||    |||||||||||||| |||| | ||||| ||||||||||||||||| |||    
T  40348108 gccaataactattagtctatgtccaacatagtgaaagggttaagccatcaaccatgatagttgaaaggaagaaatggaaacttcgccttcaaccacatga 40348009  T
Q  907 aagtcagcgacttaatttt 925  Q
    | |||||||||||||||||    
T  40348008 acgtcagcgacttaatttt 40347990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 786
Target Start/End: Complemental strand, 27076818 - 27076729
Alignment:
Q  697 taaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtttgcaaatatttacaaggg 786  Q
    ||||||||||||||||||||||| |||| ||||| |||   | ||||||||| || ||||| |||| ||||   ||||||||||||||||    
T  27076818 taaaatgaattatattaccacattaaaaaattcttcctaacacaaggtatgttagggagaatcacctgagtcaacaaatatttacaaggg 27076729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 786
Target Start/End: Original strand, 27201483 - 27201572
Alignment:
Q  697 taaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtttgcaaatatttacaaggg 786  Q
    ||||||||||||||||||||||| |||| ||||| |||   | ||||||||| || ||||| |||| ||||   ||||||||||||||||    
T  27201483 taaaatgaattatattaccacattaaaaaattcttcctaacacaaggtatgttagggagaatcacctgagtcaacaaatatttacaaggg 27201572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 725
Target Start/End: Original strand, 29374549 - 29374584
Alignment:
Q  690 aaaaggctaaaatgaattatattaccacatcaaaag 725  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29374549 aaaagactaaaatgaattatattaccacatcaaaag 29374584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 724
Target Start/End: Original strand, 43026160 - 43026191
Alignment:
Q  693 aggctaaaatgaattatattaccacatcaaaa 724  Q
    ||||||||||||||||||||||||||||||||    
T  43026160 aggctaaaatgaattatattaccacatcaaaa 43026191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 862
Target Start/End: Complemental strand, 42017907 - 42017866
Alignment:
Q  821 tattagcctatgcccaaaatagagaagggactaagccaccat 862  Q
    ||||||||||||||||| |||| ||| |||||||||||||||    
T  42017907 tattagcctatgcccaacatagtgaacggactaagccaccat 42017866  T

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Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 815 - 982
Target Start/End: Complemental strand, 9907284 - 9907109
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagccacca----tgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaag 909  Q
    |||||| ||||||||||||| ||||| | ||| ||| ||||||||||    ||||| |||||||||||||| || || ||| ||||||||||| ||||||    
T  9907284 aataacaattagcctatgcctaaaatggtgaatggattaagccaccacgcatgataattgaagggaatagaagggtatttctccttcaaccacatgaaag 9907185  T
Q  910 tcagcgacttaattttgtcaaccacct---gaatataagcatttttgacattgaaaaacctgttatttctttcttt 982  Q
      |||||||||||||| || |||||||   ||||| | | ||  ||| |||| || ||||||||||||||||||||    
T  9907184 cgagcgacttaattttatctaccacctgaggaatagaggtatccttgccattaaataacctgttatttctttcttt 9907109  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 823 - 938
Target Start/End: Original strand, 7824118 - 7824238
Alignment:
Q  823 ttagcctatgcccaaaatagagaagggactaagcca----ccatgatagttgaagggaatagatggatacttcgccttcaaccactgaaagtc-agcgac 917  Q
    |||||||||||||||||| | ||| || ||||||||    ||||| || |||| ||||| ||| | |||||||||||||||||||  |||| | ||||||    
T  7824118 ttagcctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccacgtaaaggcaagcgac 7824217  T
Q  918 ttaattttgtcaaccacctga 938  Q
    ||||| ||||| |||||||||    
T  7824218 ttaatcttgtcgaccacctga 7824238  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 815 - 938
Target Start/End: Complemental strand, 22469548 - 22469420
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagccac----catgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaag 909  Q
    |||||| |||| ||||||| |||||| | ||| ||||||||||||    ||||||| |||||||||| ||| || || ||  ||||||||||| ||||||    
T  22469548 aataacaattaacctatgctcaaaatggtgaatggactaagccaccaagcatgataattgaagggaagagaagggtatttatccttcaaccacatgaaag 22469449  T
Q  910 tcagcgacttaattttgtcaaccacctga 938  Q
      |||||||||||||| || |||||||||    
T  22469448 cgagcgacttaattttatctaccacctga 22469420  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 693 - 725
Target Start/End: Original strand, 14215867 - 14215899
Alignment:
Q  693 aggctaaaatgaattatattaccacatcaaaag 725  Q
    |||||||||||||||||||||||||||||||||    
T  14215867 aggctaaaatgaattatattaccacatcaaaag 14215899  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 724
Target Start/End: Complemental strand, 5673416 - 5673382
Alignment:
Q  690 aaaaggctaaaatgaattatattaccacatcaaaa 724  Q
    ||||||||||||||||||||||||||| |||||||    
T  5673416 aaaaggctaaaatgaattatattaccaaatcaaaa 5673382  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 815 - 934
Target Start/End: Complemental strand, 4889576 - 4889452
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagccacca----tgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaag 909  Q
    ||||||| |||||||||| ||||||||| ||| |||||||| |||||    |||||||| ||||||| ||| ||  |||||||||| |||||| |||| |    
T  4889576 aataacttttagcctatgtccaaaatagtgaatggactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatg 4889477  T
Q  910 tcagcgacttaattttgtcaaccac 934  Q
      |||||||||||||| ||||||||    
T  4889476 caagcgacttaattttatcaaccac 4889452  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 939
Target Start/End: Original strand, 34703455 - 34703584
Alignment:
Q  815 aataactattagcctatgcccaaaatagagaagggactaagcc----accatgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaag 909  Q
    |||||||||||||||||| |||| || | ||| | ||| ||||    ||||||| |||| ||||||| || || ||| ||||||||||||||| | ||||    
T  34703455 aataactattagcctatgtccaacatggtgaacgaacttagccaccaaccatgaaagttaaagggaagagttgcatatttcgccttcaaccacataaaag 34703554  T
Q  910 tcagcgacttaattttgtcaaccacctgaa 939  Q
    | || |||||||| || |||||||||||||    
T  34703555 tgagggacttaatcttatcaaccacctgaa 34703584  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 691 - 724
Target Start/End: Original strand, 30428455 - 30428488
Alignment:
Q  691 aaaggctaaaatgaattatattaccacatcaaaa 724  Q
    |||||||||||||||||||||||||||| |||||    
T  30428455 aaaggctaaaatgaattatattaccacaacaaaa 30428488  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 693 - 767
Target Start/End: Complemental strand, 21524081 - 21524007
Alignment:
Q  693 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 767  Q
    ||||||||||||||||||||||||||||||||| | || |||   | ||||||||||||||| | ||||||||||    
T  21524081 aggctaaaatgaattatattaccacatcaaaaggtccttcctaacacaaggtatgtcagagaaagacaccagagt 21524007  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 858 - 903
Target Start/End: Complemental strand, 21523939 - 21523894
Alignment:
Q  858 accatgatagttgaagggaatagatggatacttcgccttcaaccac 903  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||    
T  21523939 accatgatagttgaagggaagagatggaaacttcgctttcaaccac 21523894  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 858 - 939
Target Start/End: Complemental strand, 25845727 - 25845645
Alignment:
Q  858 accatgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaagtcagcgacttaattttgtcaaccacctgaa 939  Q
    |||||| ||||| ||||| | ||| ||| ||||||||||||||||| ||||||  |||||||||||||| |||||||||||||    
T  25845727 accatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaaccacctgaa 25845645  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 818 - 938
Target Start/End: Complemental strand, 13043472 - 13043347
Alignment:
Q  818 aactattagcctatgcccaaaatagagaagggactaagccacca----tgatagttgaagggaatagatggatacttcgccttcaaccactgaaagtca- 912  Q
    |||| |||||||||||||||||| | ||| ||  ||||||||||    || ||||||| ||||| |||   |||||||||||||||||||  |||| ||     
T  13043472 aactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaaccacgcaaaggcaa 13043373  T
Q  913 gcgacttaattttgtcaaccacctga 938  Q
    |||||||||||||||| |||||||||    
T  13043372 gcgacttaattttgtcgaccacctga 13043347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 818 - 938
Target Start/End: Complemental strand, 13051549 - 13051424
Alignment:
Q  818 aactattagcctatgcccaaaatagagaagggactaagccacca----tgatagttgaagggaatagatggatacttcgccttcaaccactgaaagtca- 912  Q
    |||| |||||||||||||||||| | ||| ||  ||||||||||    || ||||||| ||||| |||   |||||||||||||||||||  |||| ||     
T  13051549 aactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaaccacgcaaaggcaa 13051450  T
Q  913 gcgacttaattttgtcaaccacctga 938  Q
    |||||||||||||||| |||||||||    
T  13051449 gcgacttaattttgtcgaccacctga 13051424  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 844 - 937
Target Start/End: Complemental strand, 39840001 - 39839903
Alignment:
Q  844 gaagggactaagccacca----tgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaagtcagcgacttaattttgtcaaccacctg 937  Q
    ||||||||||||||||||    |||||||| ||||||| ||||||| |||||| |||||||||| |||| | |  |||||||||||| |||||||||||    
T  39840001 gaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgtcttcaaccacatgaacgacgtcgacttaattttatcaaccacctg 39839903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 693 - 767
Target Start/End: Complemental strand, 39840158 - 39840084
Alignment:
Q  693 aggctaaaatgaattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagt 767  Q
    ||||||||| ||||||||||||||||||||||| | |||||| | | || ||||| |||||| | ||||||||||    
T  39840158 aggctaaaacgaattatattaccacatcaaaaggtcctccctagcacaatgtatgccagagaaagacaccagagt 39840084  T

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Target: scaffold0204 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 925
Target Start/End: Complemental strand, 24603 - 24493
Alignment:
Q  820 ctattagcctatgcccaaaatagagaagggactaagccacca----tgatagttgaagggaatagatggatacttcgccttcaaccac-tgaaagtcagc 914  Q
    ||||||||||||||| || |||| ||| | ||||| ||||||    ||||  |||||||||| ||| ||| | ||||||||||||||| ||||||| |||    
T  24603 ctattagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagc 24504  T
Q  915 gacttaatttt 925  Q
    |||||||||||    
T  24503 gacttaatttt 24493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 704 - 768
Target Start/End: Complemental strand, 24711 - 24647
Alignment:
Q  704 aattatattaccacatcaaaagattctcccttgtataaggtatgtcagagagaaacaccagagtt 768  Q
    |||||||||||||||||||||| |||||||| | |||||| ||| ||  || |||||||||||||    
T  24711 aattatattaccacatcaaaaggttctccctagcataaggcatgccaaggaaaaacaccagagtt 24647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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