View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5910-Insertion-5 (Length: 950)
Name: NF5910-Insertion-5
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910-Insertion-5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 591
Target Start/End: Original strand, 14784237 - 14784813
Alignment:
| Q |
9 |
ataccaagaaaagagcttttctnnnnnnngcttttccgtgaataatgattaagttgctttgaacgtttcacaaatttcaaataggatgacagcatcttag |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14784237 |
ataccaagaaaagagcttttctaaaaaaagcttttccgtgaataatgattaagttgctttgaacgtttcacaaatttcaaataggatgacagcatcttag |
14784336 |
T |
|
| Q |
109 |
atgagatatactcgcttcttacctttttataagcacaatttgttttttnnnnnnnnnncgagtgttattcaaatatcaaaatatttacatcgacgttatg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14784337 |
atgagatatactcgcttcttacctttttataaggacaatttgtt----aaaaaaaaaccgagtgttattcaaatatcaaaatatttacatcgacaatatg |
14784432 |
T |
|
| Q |
209 |
ctcctctagccttaattataagtaaaaataaataaatttctcacatcaaatataaacaaaagtcaccaaatttatctctatataatcccattgtttcaaa |
308 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
14784433 |
ctcctctagcattaattataagtaaaaataaataaatttctcacatcaaatataaacaaaagtcaccaaatttatctctatataa-cccattctttcaaa |
14784531 |
T |
|
| Q |
309 |
aatgtcactttaattctctccattttcaagattaatgcatagtcaaatattaattctctctcagaatgttgacaaggacattttacatcacacaggttat |
408 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
14784532 |
aatgtcaccttaattctctccattttcaagattaatgcatagtcaa-tattaattctctctgagaatgttgaccaggacattttacatcacacatgttat |
14784630 |
T |
|
| Q |
409 |
aagcatctcaacaatatggcgaggtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14784631 |
aagcatctcaacaatatggcgaggtatttggaggcaaacataagtccaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagca |
14784730 |
T |
|
| Q |
509 |
gagtaagtggtttggaagcaacaatgcttaagttttgatggcaaacttattccatctaaatcagctttgagctcttatcatac |
591 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
14784731 |
gagtaagtggtttggaagcaacaatgcttgagttttgatggcaaacttacgctatctaaatcagttttgagctcttatcatac |
14784813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 629 - 950
Target Start/End: Original strand, 14784814 - 14785137
Alignment:
| Q |
629 |
gtaacgagatgtaaaaaattcaaatgaactttttatgggttaagtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaa |
728 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
14784814 |
gtaacgagatgtaaaaaattcaaatgaacattttatgggttaaatatgac-aatctcgcagaccc-gtcttgtggggcaagacatttgttgtcttccaaa |
14784911 |
T |
|
| Q |
729 |
gaatgagggtggcctagacataagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggt |
828 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14784912 |
gaatgagggtggcctagacataagagaactcatcagatgaatgatgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggt |
14785011 |
T |
|
| Q |
829 |
gcaagattctttatagtaagtgtgggagtaataaagatcttagagtaaccatagattctcaattatatgattct---ccttgtggaaagctttaacaggt |
925 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||||| |
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|
| T |
14785012 |
gcaaggttctttatagtaagtgtgggagtaataaagatcttagagaaaccatagattctcaatcatatgattctctcctttgtggaaagctttaacaggt |
14785111 |
T |
|
| Q |
926 |
atctgggatcaa-ttcagcaaaatat |
950 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
14785112 |
atctgggatcaatttcagcaaaatat |
14785137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 382 - 939
Target Start/End: Complemental strand, 31117053 - 31116491
Alignment:
| Q |
382 |
aaggacattttacatcacacaggttataagcatctcaacaatatggcgaggtatttggaggcaaacataagttcaggtagagctaccaagg-gaaagttt |
480 |
Q |
| |
|
||||| |||||| | |||||| ||||||||||| |||| ||||||| | |||||||| || |||||| ||| |||||||| | || | || ||||||| |
|
|
| T |
31117053 |
aaggatattttatagcacacaagttataagcatgtcaataatatgggcaagtatttgggggaaaacatcagtccaggtagatccactagggaaaaagttt |
31116954 |
T |
|
| Q |
481 |
cataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacaatgcttaagttttgatggcaaacttattccatctaaatcagctttgagc |
580 |
Q |
| |
|
||||||||| |||| |||||| ||| |||| ||||||| |||||||||| ||||||||||||||| | || ||||| | ||||||||||||||||||| |
|
|
| T |
31116953 |
cataacatcattgaaaaaattcaaaacagactaagtgg-ttggaagcaataatgcttaagttttgccgacagacttactttatctaaatcagctttgagc |
31116855 |
T |
|
| Q |
581 |
tct-tatcatactatcatatgcagtattctaagcagcctaagaccctttgtaacgagatg--taaaaaattcaaatgaactttttatgggttaagtatga |
677 |
Q |
| |
|
| | || |||||||||||||||||||| |||||| ||||| |||||||||| ||| ||| |||||| ||||| || ||||||||||| | | | | |
|
|
| T |
31116854 |
tttataccatactatcatatgcagtatgctaagctccctaaaaccctttgtagcgaaatgaaaaaaaaaatcaaaggagctttttatgggatgatattaa |
31116755 |
T |
|
| Q |
678 |
ccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagaca-taagagacctcatcagatgaatgacgct |
776 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||| || ||||||||||||||| ||||| |||| | |
|
|
| T |
31116754 |
ccaatcttgcagaccccatcttgtgggatgggacatttgttgtcttcctaaaaatgagggtggcctaggcattaagagacctcatcatatgaaagacgtt |
31116655 |
T |
|
| Q |
777 |
tttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaagatcttagagtaa |
876 |
Q |
| |
|
||||||| ||||||||||| |||| | || ||||| ||||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
31116654 |
tttcttatgaagatgcttttgaatctgatcaccaagcttgatgacctatggtgtaagcttctttatagtaagtatgggaggaataaagatcttagggtaa |
31116555 |
T |
|
| Q |
877 |
ccatagattctcaattatatgattctcc-ttgtggaaagctttaacaggtatctgggatcaatt |
939 |
Q |
| |
|
||||||||||| ||| ||||||||| || |||||||||||||||||| |||| |||||| |||| |
|
|
| T |
31116554 |
ccatagattctaaatcatatgattcccctttgtggaaagctttaacaagtatttgggattaatt |
31116491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 383 - 925
Target Start/End: Complemental strand, 48899431 - 48898888
Alignment:
| Q |
383 |
aggacattttacatcacacaggttataagcatctcaacaatatggcgaggtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttca |
482 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||| |||| ||||||| | |||||||| ||| ||||| ||| ||||||||||||| | |||||||||||| |
|
|
| T |
48899431 |
aggacattttacagcatacaagttataaacatgtcaataatatgggcaagtatttgggggctaacattagtgcaggtagagctactaggggaaagtttca |
48899332 |
T |
|
| Q |
483 |
taacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacaatgcttaagttttgatggcaaacttattccatctaaatcagctttgagctc |
582 |
Q |
| |
|
|||| || ||||||||||| ||| ||| ||||||||| ||||||||||||||||| |||||| || | ||||| | |||||||| || ||||||||| |
|
|
| T |
48899331 |
taacgtcattgacaaaattcaaaatagactaagtggtt-ggaagcaacaatgctta-gttttgtcggtagacttactttatctaaattagttttgagctc |
48899234 |
T |
|
| Q |
583 |
t-tatcatactatcatatgcagtattctaagcagcctaagaccctttgtaacgagatgtaaaaaattcaaatgaactttttatgggttaagtatgaccaa |
681 |
Q |
| |
|
| || | |||||||||||||||||| |||||| ||||| | ||||||||||||||| |||||||||| | || ||||||||||||| | ||||||| |
|
|
| T |
48899233 |
tataccttactatcatatgcagtatgctaagctccctaaaatgctttgtaacgagatggaaaaaattcagaggagctttttatgggttgatactgaccaa |
48899134 |
T |
|
| Q |
682 |
tctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaatgacgcttttc |
780 |
Q |
| |
|
||||||| | ||| |||||| || ||||||||||||||||| ||||||||||||||||||| ||| || | ||||||| | |||||||||||||||| |
|
|
| T |
48899133 |
tctcgcaaaacccatcttgttggatgggacatttgttgtcttcctaagaatgagggtggcctaggcattaaaaaacctcataatatgaatgacgcttttc |
48899034 |
T |
|
| Q |
781 |
ttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaagatcttagagtaaccat |
880 |
Q |
| |
|
||| ||||||| |||||||| | || ||||| | | ||||||| ||||| ||| |||| |||||||||| |||||| |||||||||||||| ||| |||| |
|
|
| T |
48899033 |
ttatgaagatgttttggaatctaatcaccaagcctaatgacctatggtgtaaggttctctatagtaagtatgggaggaataaagatcttagggtagccat |
48898934 |
T |
|
| Q |
881 |
agattctcaattatatgattctcc-ttgtggaaagctttaacaggt |
925 |
Q |
| |
|
||||||| ||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
48898933 |
agattctaaatcatatgattctcctttatggaaagctttaacaggt |
48898888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 827
Target Start/End: Original strand, 26084777 - 26084893
Alignment:
| Q |
712 |
atttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataacca |
810 |
Q |
| |
|
|||||||||||||| || | | |||||||| ||| ||| ||||||||||| || ||||||||||||||||| | ||||||| |||||||| | || || | |
|
|
| T |
26084777 |
atttgttgtcttcccaaaattaagggtggcttaggcattaagagacctcaccatatgaatgacgcttttctaatgaagatgttttggaatttgatcacaa |
26084876 |
T |
|
| Q |
811 |
aacttgatgacctttgg |
827 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
26084877 |
aaccagatgacctttgg |
26084893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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