View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910-Insertion-7 (Length: 835)
Name: NF5910-Insertion-7
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 460
Target Start/End: Original strand, 1462922 - 1463375
Alignment:
| Q |
9 |
gttttcttccctacactacagacaacatctgatggtgctaacttcatggaaaaatatcagaatatcatcgtgggctcgatcttctttattgttacctatt |
108 |
Q |
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| T |
1462922 |
gttttcttccctacactacagacaacaactgatggtgctaacttcatggaaaaatatcagaatatcatcgtgggctcgatcttctttattgttacctatt |
1463021 |
T |
|
| Q |
109 |
ttcaactagagttattttctactgtgacaagacactcttataaaagcatcatctttgggatcatattcataattatgatacaatatttcactccagtttt |
208 |
Q |
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||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1463022 |
ttcaactagagttattttctattgcgacaagacactcttttaaaagcatcatctttgggatcatattcataattatgatacaatatttcactccagtttt |
1463121 |
T |
|
| Q |
209 |
agaacttagtcttttttcattcatgtattgcatcctttgggccctctcaattggtttgtttgtcatttctctctgtaaatggatccttttgtttgtcatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1463122 |
agaacttagtcttttttcattcatgtattgcatcctttgggccctctcaattggtttgtttgtcatttctctctgtaaatggatccttttgtttgtcatt |
1463221 |
T |
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| Q |
309 |
gctctccgagaatggatctctagagtgaagatactgtattctcaaaggagagtttagaattttatttatctcaataaaattggttgtgacataaatagtt |
408 |
Q |
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| T |
1463222 |
gctctccgagaatggatctctagagtgaagatactgtattctcaaaggagagtttagaattttatttatctcaataaaattggttgtgacataaatagtt |
1463321 |
T |
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| Q |
409 |
tannnnnnngt--tctgtccttttctaatccttctttgttttataagcattgca |
460 |
Q |
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| T |
1463322 |
tatttttttgttgtctgtccttttctaatccttctttgttttataagcattgca |
1463375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 455 - 835
Target Start/End: Original strand, 1463461 - 1463831
Alignment:
| Q |
455 |
attgcaatcaaaaatattgtttctacctcattgaatgaggctaattatgtaagcaaatacaacaaattggtcacttttggatggagaacattttttatca |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1463461 |
attgcaatcaaaaatattgtttctacctcattgaatgaggctaattatgtaagcaaatacaacaaattggtcacttttggatggagaacattttttatca |
1463560 |
T |
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| Q |
555 |
catgtagagttgtttcaacctcttctctgaagtaatcacagaatggcatgctcaaaatatcatttctttctattgcctcatggtttactcaatgcagagt |
654 |
Q |
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| T |
1463561 |
catgtagagttgtttcaacctcttctctgaagtaatcacagaatggcatgctcaaaatatcatttctttctattgcctcatggtttactcaatgcagagt |
1463660 |
T |
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| Q |
655 |
tcagtcaatcttctttctaaggcacacctcattgtatttcccttccattactctgcaccataacacgcacgatgttcccgaacgcatctcccaacccagc |
754 |
Q |
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| T |
1463661 |
tcagtcaatcttctttctaaggcacacctcattgtatttcccttccattactctgcaccataacttgcacgatgttcccgaacgcatctcccaaccc--- |
1463757 |
T |
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| Q |
755 |
ttcataaggcacgcctcattttatgctgtgaaatggtaatacaacctaaaatgtggacatatttttacgccttattgttct |
835 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| |
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| T |
1463758 |
-------ggcacgcctcattttatgctgtgaaatggtaatacaacctaaaatgaggacataattttacgcctcattattct |
1463831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 1430144 - 1429972
Alignment:
| Q |
13 |
tcttccctacactacagacaacatctgatggtgctaacttcatggaaaaatatcagaatatcatcgtgggctcgatcttctttattgttacctattttca |
112 |
Q |
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|||||||||| ||| |||||||||| ||||||| |||||||||| ||||||||||||||| || || |||||| ||| | ||||||||| | |||| |
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| T |
1430144 |
tcttccctaccctaaagacaacatcatatggtgcaaacttcatggcaaaatatcagaatattctcatgcagtcgatcgtctatcttgttacctttattca |
1430045 |
T |
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| Q |
113 |
actagagttattttctactgtgacaagacactcttataaaagcatcatctttgggatcatattcataattatg |
185 |
Q |
| |
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| || || ||||||||| ||||| ||| ||| | ||| || |||||||||||||||||||||||||||| |
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| T |
1430044 |
aataaagctattttctatcacgacaatgcacccttttcaaaccagcatctttgggatcatattcataattatg |
1429972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 455 - 502
Target Start/End: Original strand, 1462119 - 1462166
Alignment:
| Q |
455 |
attgcaatcaaaaatattgtttctacctcattgaatgaggctaattat |
502 |
Q |
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| T |
1462119 |
attgcaatctaaaatattgtttctacctcattgaatcaggctaattat |
1462166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 610
Target Start/End: Complemental strand, 1536394 - 1536348
Alignment:
| Q |
564 |
ttgtttcaacctcttctctgaagtaatcacagaatggcatgctcaaa |
610 |
Q |
| |
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||||||| |||||||||||||||||||||||||| || ||||||||| |
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| T |
1536394 |
ttgtttcgacctcttctctgaagtaatcacagaacgggatgctcaaa |
1536348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 718
Target Start/End: Complemental strand, 1536023 - 1535990
Alignment:
| Q |
685 |
attgtatttcccttccattactctgcaccataac |
718 |
Q |
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| T |
1536023 |
attgtatttcccttccattactctgcaccataac |
1535990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 26174572 - 26174661
Alignment:
| Q |
457 |
tgcaatcaaaaatattgtttctacctcattgaatgaggctaattatgtaagcaaatacaacaaattggtcacttttggatggagaacatt |
546 |
Q |
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| T |
26174572 |
tgcaatctgaaattttgtttctaccacattgaatcaggctaattatgtaagcaagtataacaagttggtcacttttggacggagaacatt |
26174661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 731 - 776
Target Start/End: Complemental strand, 26413262 - 26413217
Alignment:
| Q |
731 |
cccgaacgcatctcccaacccagcttcataaggcacgcctcatttt |
776 |
Q |
| |
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| T |
26413262 |
cccgaatgcagctcccaacccaacttcataaggcacgcctcatttt |
26413217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 606
Target Start/End: Complemental strand, 26413821 - 26413776
Alignment:
| Q |
561 |
gagttgtttcaacctcttctctgaagtaatcacagaatggcatgct |
606 |
Q |
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| T |
26413821 |
gagttgttttgacctcttctctgcagtaatcacataatggcatgct |
26413776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 599
Target Start/End: Complemental strand, 2765339 - 2765292
Alignment:
| Q |
552 |
tcacatgtagagttgtttcaacctcttctctgaagtaatcacagaatg |
599 |
Q |
| |
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||||||||||||||||||||||||| | |||| |||| |||||||||| |
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| T |
2765339 |
tcacatgtagagttgtttcaacctcctttctgcagtagtcacagaatg |
2765292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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