View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910-Insertion-9 (Length: 600)
Name: NF5910-Insertion-9
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910-Insertion-9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 5 - 600
Target Start/End: Complemental strand, 5757781 - 5757168
Alignment:
| Q |
5 |
atcactaaaatctaaatcatccaaagcaagaggttacatgtgttgcagaatgttcattagcttcattctgtaattgaagaattcttaaaatgttattaca |
104 |
Q |
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| T |
5757781 |
atcactaaaatctaaatcatccaaagcaagaggttacatgtgttgcagaatgttcattagcttcattttgtaattgaagaattcttaaaatgttaataca |
5757682 |
T |
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| Q |
105 |
ttttaatgtagttatcaatggcacaaagattgtgtcaaacagtgttacaaaattgtgccacaaacaacctaatcaagtgtcaaatttgagttcaagtgta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5757681 |
ttttaatgtagttatcaatggcacaaagattgtgtcaaacagtgttacaaaattgtgccacaaacaacctaatcaagtgtcaaatttgagttcaagtgta |
5757582 |
T |
|
| Q |
205 |
gatcatgatgtctgaacaaaaagctacccttttacaaaatggatttctgtctctgatgaattcaagctgtttaagaaacatctgaagaaggagtttttcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5757581 |
gatcatgatgtctgaacaaaaagctacccttttacaaaatggatttctgtctctgatgaattcaagctgtttaagaaacatctgaagaaggagtttttcc |
5757482 |
T |
|
| Q |
305 |
aatccttgttgtatccaaaatcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5757481 |
aatccttgttgtatccaaaatcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatg |
5757382 |
T |
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| Q |
405 |
aagtaataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaatag------------------aggtatcaaatgaagctatatt |
486 |
Q |
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| T |
5757381 |
aagtaataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaatagaggtttgaaaacttgatgaggtatcaaatgaagctatatt |
5757282 |
T |
|
| Q |
487 |
ggtcgccgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggta |
586 |
Q |
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| T |
5757281 |
ggtcgacgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggta |
5757182 |
T |
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| Q |
587 |
attgcattgttaga |
600 |
Q |
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| T |
5757181 |
attgcattgttaga |
5757168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 5 - 600
Target Start/End: Original strand, 6073331 - 6073945
Alignment:
| Q |
5 |
atcactaaaatctaaatcatccaaagcaagaggttacatgtgttgcagaatgttcattagcttcattctgtaattgaagaattcttaaaatgttattaca |
104 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
6073331 |
atcactaaaagctaaatcattcaaagcaagaggttacatgtgttgcagaatgttcattagcttcattttgtaattgaagaattcttaaaatgttaataca |
6073430 |
T |
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| Q |
105 |
ttttaatgtagttatcaatggcacaaagattgtgtcaaacagtgttacaaaattgtgccacaaacaacctaatcaagtgtcaaatttgagttcaagtgta |
204 |
Q |
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| T |
6073431 |
ttttaatgtagttatcaatggcacaaatattgtgtcaaacagtgttacaaaattgtgccacaaacaacctaatcaagtgtcaaatttgagttcaagtgta |
6073530 |
T |
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| Q |
205 |
gatcatgatgtctgaacaaaaagctacccttttacaaaatggatttctgtctctgatgaattcaagctgtttaagaaacatctgaagaaggagtttttcc |
304 |
Q |
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| T |
6073531 |
gatcatgatgtctgaacaaaaagctacccttttacaaaatggatttctgtctctgatgaattcaagctgtttaagaaacatctgaagaaggagtttttcc |
6073630 |
T |
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| Q |
305 |
aatccttgttgtatcc-aaaatcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaat |
403 |
Q |
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| T |
6073631 |
aatccttgttgtatccaaaaatcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatggat |
6073730 |
T |
|
| Q |
404 |
gaagtaataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaata------------------gaggtatcaaatgaagctatat |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6073731 |
gaagtaataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaatagaggtttgaaaacttgatgaggtatcaaatgaagctatat |
6073830 |
T |
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| Q |
486 |
tggtcgccgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggt |
585 |
Q |
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| T |
6073831 |
tggtcgccgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggt |
6073930 |
T |
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| Q |
586 |
aattgcattgttaga |
600 |
Q |
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||||||||||||||| |
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| T |
6073931 |
aattgcattgttaga |
6073945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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