View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_high_14 (Length: 281)
Name: NF5910_high_14
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 5757452 - 5757165
Alignment:
| Q |
1 |
gcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatgaagtaataaatattattatgtattatgaa |
100 |
Q |
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| T |
5757452 |
gcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatgaagtaataaatattattatgtattatgaa |
5757353 |
T |
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| Q |
101 |
gtgttaaagtatccaacatgaaccttaatagaggt------------------atcaaatgaagctatattggtcgccgagggtaagataacagattgat |
182 |
Q |
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| T |
5757352 |
gtgttaaagtatccaacatgaaccttaatagaggtttgaaaacttgatgaggtatcaaatgaagctatattggtcgacgagggtaagataacagattgat |
5757253 |
T |
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| Q |
183 |
ttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaattgcattgttagaatt |
270 |
Q |
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| T |
5757252 |
ttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaattgcattgttagaatt |
5757165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 6073661 - 6073948
Alignment:
| Q |
1 |
gcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatgaagtaataaatattattatgtattatgaa |
100 |
Q |
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| T |
6073661 |
gcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatggatgaagtaataaatattattatgtattatgaa |
6073760 |
T |
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| Q |
101 |
gtgttaaagtatccaacatgaaccttaatagagg------------------tatcaaatgaagctatattggtcgccgagggtaagataacagattgat |
182 |
Q |
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| T |
6073761 |
gtgttaaagtatccaacatgaaccttaatagaggtttgaaaacttgatgaggtatcaaatgaagctatattggtcgccgagggtaagataacagattgat |
6073860 |
T |
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| Q |
183 |
ttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaattgcattgttagaatt |
270 |
Q |
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| T |
6073861 |
ttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaattgcattgttagaatt |
6073948 |
T |
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