View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_high_15 (Length: 279)
Name: NF5910_high_15
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 5757527 - 5757781
Alignment:
| Q |
11 |
cagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgtttgtggca |
110 |
Q |
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| T |
5757527 |
cagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgtttgtggca |
5757626 |
T |
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| Q |
111 |
caattttgtaacactgtttgacacaatctttgtgccattgataactacattaaaatgtaataacattttaagaattcttcaattacagaatgaagctaat |
210 |
Q |
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| T |
5757627 |
caattttgtaacactgtttgacacaatctttgtgccattgataactacattaaaatgtattaacattttaagaattcttcaattacaaaatgaagctaat |
5757726 |
T |
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| Q |
211 |
gaacattctgcaacacatgtaacctcttgctttggatgatttagattttagtgat |
265 |
Q |
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| T |
5757727 |
gaacattctgcaacacatgtaacctcttgctttggatgatttagattttagtgat |
5757781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 6073585 - 6073331
Alignment:
| Q |
11 |
cagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgtttgtggca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6073585 |
cagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgtttgtggca |
6073486 |
T |
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| Q |
111 |
caattttgtaacactgtttgacacaatctttgtgccattgataactacattaaaatgtaataacattttaagaattcttcaattacagaatgaagctaat |
210 |
Q |
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| T |
6073485 |
caattttgtaacactgtttgacacaatatttgtgccattgataactacattaaaatgtattaacattttaagaattcttcaattacaaaatgaagctaat |
6073386 |
T |
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| Q |
211 |
gaacattctgcaacacatgtaacctcttgctttggatgatttagattttagtgat |
265 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
6073385 |
gaacattctgcaacacatgtaacctcttgctttgaatgatttagcttttagtgat |
6073331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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