View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_high_16 (Length: 246)
Name: NF5910_high_16
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_high_16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 19136879 - 19136722
Alignment:
| Q |
89 |
gctataaacgacaaaagaatcttactgtttttcgtccggaaagnnnnnnngaagaatcttattgcttctttggctacagagaggaacaattattggtcca |
188 |
Q |
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| T |
19136879 |
gctataaacgacaaaagaatcttactgtttttcgtccggaaagaaaaaaagaagaatcttattgcttctttggctacggagaggaacaattattggtcca |
19136780 |
T |
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| Q |
189 |
tatcaaagggaaaatgtnnnnnnnnnnttactggcagaacatttaaagaaaaacatat |
246 |
Q |
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| T |
19136779 |
tatcaaagggaaaatgtaaaaaaataattactggtagaacatttaaagaaaaacatat |
19136722 |
T |
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Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 20736278 - 20736121
Alignment:
| Q |
89 |
gctataaacgacaaaagaatcttactgtttttcgtccggaaagnnnnnnngaagaatcttattgcttctttggctacagagaggaacaattattggtcca |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20736278 |
gctataaacgacaaaagaatcttactgtttttcgtccggaaagaaaaaaagaagaatcttattgcttctttggctacggagaggaacaattattggtcca |
20736179 |
T |
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| Q |
189 |
tatcaaagggaaaatgtnnnnnnnnnnttactggcagaacatttaaagaaaaacatat |
246 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
20736178 |
tatcaaagggaaaatgtaaaaaaataattactggtagaacatttaaagaaaaacatat |
20736121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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