View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_high_21 (Length: 217)
Name: NF5910_high_21
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 47990512 - 47990684
Alignment:
| Q |
45 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
144 |
Q |
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| T |
47990512 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
47990611 |
T |
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| Q |
145 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttc |
217 |
Q |
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| T |
47990612 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttc |
47990684 |
T |
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