View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_high_5 (Length: 427)
Name: NF5910_high_5
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 14784237 - 14784624
Alignment:
| Q |
18 |
ataccaagaaaagagcttttctnnnnnnngcttttccgtgaataatgattaagttgctttgaacgtttcacaaatttcaaataggatgacagcatcttag |
117 |
Q |
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| T |
14784237 |
ataccaagaaaagagcttttctaaaaaaagcttttccgtgaataatgattaagttgctttgaacgtttcacaaatttcaaataggatgacagcatcttag |
14784336 |
T |
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| Q |
118 |
atgagatatactcgcttcttacctttttataagcacaatttgttttttnnnnnnnnncgagtgttattcaaatatcaaaatatttacatcgacgttatgc |
217 |
Q |
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| T |
14784337 |
atgagatatactcgcttcttacctttttataaggacaatttgtta---aaaaaaaaccgagtgttattcaaatatcaaaatatttacatcgacaatatgc |
14784433 |
T |
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| Q |
218 |
tcctctagccttaattataagtaaaaataaataaatttctcacatcaaatataaacaaaagtcaccaaatttatctctatataatcccattgtttcaaaa |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
14784434 |
tcctctagcattaattataagtaaaaataaataaatttctcacatcaaatataaacaaaagtcaccaaatttatctctatataa-cccattctttcaaaa |
14784532 |
T |
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| Q |
318 |
atgtcactttaattctctccattttcaagattaatgcatagtcaaatattaattctctctcagaatgttgacaaggacattttacatcacaca |
410 |
Q |
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| T |
14784533 |
atgtcaccttaattctctccattttcaagattaatgcatagtc-aatattaattctctctgagaatgttgaccaggacattttacatcacaca |
14784624 |
T |
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