View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_high_8 (Length: 374)
Name: NF5910_high_8
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 39 - 361
Target Start/End: Complemental strand, 35368124 - 35367801
Alignment:
| Q |
39 |
aattgattgcaaagttctgcattagtagacttcgaaataatgcagaatttggattggtcatttgatgtatatgtattaaacccctaataactttatatta |
138 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35368124 |
aattgattgcaaagttctgcattagtagacttagaaataatgcagaatttggattggtcatttgatgtagatgtattaaacccctaataactttatatta |
35368025 |
T |
|
| Q |
139 |
tcttcccagtatcatactttgtaaagaaagtttacgggttcagaatatgaaaattattatctccaccagagtatgtataaataattatagta-tttatgt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |
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| T |
35368024 |
tcttcccagtatcatactttgtaaagaaagtttacgggttcagaatatgaaaattattatctccaccatagtatgtataaataataatagtattttatgt |
35367925 |
T |
|
| Q |
238 |
aaaacaaacatgaatctcatgacaagtatatattgaactaattttctccctgtgtgttacacatgaggaatataaaacttgtcaatcatccaagcgaaca |
337 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35367924 |
aaaacaaacatgaatctcatgacaggtatatattgaactaattttctccctgtgtgttacacatgaggaatataaaacttttcaatcatccaagcgaaca |
35367825 |
T |
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| Q |
338 |
acttattttcatctcaaggtagta |
361 |
Q |
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|||||||||||||||||||||||| |
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| T |
35367824 |
acttattttcatctcaaggtagta |
35367801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 10419712 - 10419836
Alignment:
| Q |
39 |
aattgattgcaaagttctgcattagtagacttcgaaataatgcagaatttggattggtcatttgatgtatatgtattaaacccctaataactttatatta |
138 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10419712 |
aattgattgcaaagttctgcattagtagacttccaaactatgcagaatttggattggtcatttgatgtatatgtattaaacccctaataactttatatta |
10419811 |
T |
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| Q |
139 |
tcttcccagtatcatactttgtaaa |
163 |
Q |
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|||||||| ||||||| |||||||| |
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| T |
10419812 |
tcttcccattatcatattttgtaaa |
10419836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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