View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5910_low_1 (Length: 763)
Name: NF5910_low_1
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 1 - 745
Target Start/End: Complemental strand, 23100460 - 23099716
Alignment:
| Q |
1 |
gaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttacaatgagacgtgt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23100460 |
gaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttacaatgagaagtgt |
23100361 |
T |
|
| Q |
101 |
aatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaaatatgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23100360 |
aatgcataactttaaacctaaaccatgaaaggcaaatgatgaaacatttccaaaactcagtggagtgtgacagacaaacaaccatcaggcaaatatgtgt |
23100261 |
T |
|
| Q |
201 |
tgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaatctaattcacaaagacaaaattggtttaccttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23100260 |
tgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaaactaattcacaaagacaaaattggtttaccttgt |
23100161 |
T |
|
| Q |
301 |
gttgattatgtcttagctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggcatactaatgcaa |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23100160 |
gttgattatgtcttacctactttgacatgagctagaacaatatctcaggctccaccccaccattgatttccaacatccatatattggcatactaatgcaa |
23100061 |
T |
|
| Q |
401 |
tcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaaaagttgtt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23100060 |
tcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaaaagttgtt |
23099961 |
T |
|
| Q |
501 |
caggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaacaatgaatcttca |
600 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23099960 |
caggaagaaatagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaacaatgaatcttca |
23099861 |
T |
|
| Q |
601 |
aaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataataccaacacttgctt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23099860 |
aaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataataccaacacttgctt |
23099761 |
T |
|
| Q |
701 |
gaatccaggggtgtgaaaaatgtggttaactgaaaccatatcact |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23099760 |
gaatccaggggtgtgaaaaatgtggttaactgaaaccatatcact |
23099716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 674; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 745
Target Start/End: Complemental strand, 6719100 - 6718355
Alignment:
| Q |
1 |
gaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaat-gttatcctagacgcgaaaattagtttttacttgttttacaatgagacgtg |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6719100 |
gaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaattgttatcctagacgcgaaaattagtttttacttgttttacaatgagacgtg |
6719001 |
T |
|
| Q |
100 |
taatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaaatatgtg |
199 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6719000 |
taatgcataactttaaacctaaaccatgaaagacaaatgatgaaacatttccaaaactcagaggagtgtgacagacaatcaaccatcaggcaaatatgtg |
6718901 |
T |
|
| Q |
200 |
ttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaatctaattcacaaagacaaaattggtttaccttg |
299 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6718900 |
ttaaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaaactaattcacaaagacaaaattggtttaccttg |
6718801 |
T |
|
| Q |
300 |
tgttgattatgtcttagctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggcatactaatgca |
399 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6718800 |
tgttgattatgtcttacctactttgacatgagcaagaacaatatctcaggctccaccccaccattgatttccaacatccatatattggcatactaatgca |
6718701 |
T |
|
| Q |
400 |
atcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaaaagttgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6718700 |
atcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaaaagttgt |
6718601 |
T |
|
| Q |
500 |
tcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaacaatgaatcttc |
599 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6718600 |
tcaggaagaaacaaagtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaacaatgaatcttc |
6718501 |
T |
|
| Q |
600 |
aaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataataccaacacttgct |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6718500 |
aaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataataccaacacttgct |
6718401 |
T |
|
| Q |
700 |
tgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcact |
745 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6718400 |
tgaatctaggggtgtgaaaaatgtggttaactgaaaccatatcact |
6718355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 18331539 - 18331682
Alignment:
| Q |
101 |
aatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaaatatgtgt |
200 |
Q |
| |
|
||||||||| ||||| |||||| |||| |||| |||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
18331539 |
aatgcataattttaagcctaaaccatggaagataaatgatgaaacatttccaaaactcagttgagtgtggcagagaatcaaccatcaggcaaatatgttt |
18331638 |
T |
|
| Q |
201 |
tgaatgttcaatgaagcattataacaaacaggtggtgaagggaa |
244 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
18331639 |
tgaaagtttaatgaagcattataacaaacaggtgggggagggaa |
18331682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 93 - 745
Target Start/End: Complemental strand, 34339296 - 34338644
Alignment:
| Q |
93 |
agacgtgtaatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaa |
192 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34339296 |
agacgtgtaatgcttaactttaaacctaaaccatgaaagacaaatgatgaaacattttcaaaactcagtggagtgtgacagacaatcaaccatcaggcaa |
34339197 |
T |
|
| Q |
193 |
atatgtgttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaatctaattcacaaagacaaaattggtt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34339196 |
atatgtgttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaaactaattcacaaagacaaaattggtt |
34339097 |
T |
|
| Q |
293 |
taccttgtgttgattatgtcttagctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggcatac |
392 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34339096 |
tatcttgtgttgattatgtcttacctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggcatac |
34338997 |
T |
|
| Q |
393 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaa |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34338996 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacttttcataatctaagggataatccaagttaa |
34338897 |
T |
|
| Q |
493 |
aagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaacaatg |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34338896 |
aagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaacaatg |
34338797 |
T |
|
| Q |
593 |
aatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataataccaac |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
34338796 |
aatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataataccaac |
34338697 |
T |
|
| Q |
693 |
acttgcttgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcact |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34338696 |
acttgcttgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcact |
34338644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 1e-83; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 26121694 - 26121521
Alignment:
| Q |
1 |
gaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttacaatgagacgtgt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26121694 |
gaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgtgaaaattagtttttacttgttttacaatgagacgtgt |
26121595 |
T |
|
| Q |
101 |
aatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacaga |
174 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26121594 |
aatgcataactttaaacctaaaccatgaaagacaaatgatgaaacatttccaaaactcagtggagtgtgacaga |
26121521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 26127156 - 26126983
Alignment:
| Q |
1 |
gaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttacaatgagacgtgt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26127156 |
gaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgtgaaaattagtttttacttgttttacaatgagacgtgt |
26127057 |
T |
|
| Q |
101 |
aatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacaga |
174 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26127056 |
aatgcataactttaaacctaaaccatgaaagacaaatgatgaaacatttccaaaactcagtggagtgtgacaga |
26126983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 393 - 611
Target Start/End: Original strand, 5194963 - 5195172
Alignment:
| Q |
393 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaa |
492 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| | | |
|
|
| T |
5194963 |
taatgcaaacataaaaaatcctattgtgatatctagaagctgaccattgaaaatccaatccaagttaaccttccataatctaaggagtaag----gacta |
5195058 |
T |
|
| Q |
493 |
aagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaacaatg |
592 |
Q |
| |
|
||| |||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5195059 |
aagctgttcaggaaaagataggg-----agaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacatctaacaaacaacaaagaacaatg |
5195153 |
T |
|
| Q |
593 |
aatcttcaaaattgtggca |
611 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
5195154 |
catcttcacaattgtggca |
5195172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 38945467 - 38945601
Alignment:
| Q |
101 |
aatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaaatatgtgt |
200 |
Q |
| |
|
||||||||||||||| |||||| |||| |||| ||||||| |||||||||||||||| | | ||||||| || | ||||||||||||||||||||||| | |
|
|
| T |
38945467 |
aatgcataactttaagcctaaaccatggaagataaatgataaaacatttccaaaacttagttgagtgtggcacagaatcaaccatcaggcaaatatgttt |
38945566 |
T |
|
| Q |
201 |
tgaatgttcaatgaagcattataacaaacaggtgg |
235 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |
|
|
| T |
38945567 |
tgaaagttcaatgaagcattacaacaaacaggtgg |
38945601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 612 - 706
Target Start/End: Original strand, 5195212 - 5195303
Alignment:
| Q |
612 |
gataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataataccaacacttgcttgaatcc |
706 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
5195212 |
gataacttgtcatcaactaagaatattttatcactactttagattttaaccttgctaagaatatacaaaaataat---gacacttgcttgaatcc |
5195303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 320336 - 320392
Alignment:
| Q |
322 |
ttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatcc |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
320336 |
ttgacatgagccagaacaatctctctggctcaattccaccattgatttccaatatcc |
320392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 9461548 - 9461479
Alignment:
| Q |
163 |
gagtgtgacagacaatcaaccatcaggcaaatatgtgttgaatgttcaatgaagcattataacaaacagg |
232 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9461548 |
gagtgtggcagagaatcaaccatcaggcaaagatgtgttgaaagttcaatgaagcattataacaaacagg |
9461479 |
T |
|
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