View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_low_11 (Length: 320)
Name: NF5910_low_11
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 36447199 - 36447087
Alignment:
| Q |
181 |
agtttgaatgtatgtatctccatgggataagatagttagtacgaaccaatagaatgctttcaaaacgtcactttcagccaatagtaagtagacatacctc |
280 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||| |
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| T |
36447199 |
agtttgaatgtatgtatctccatgggatgagatagttagtacgaaccaatagcatgctttcaaaacgtcactttcagccaatagcaagtagacctaactc |
36447100 |
T |
|
| Q |
281 |
atcaccattttca |
293 |
Q |
| |
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||||||||||||| |
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| T |
36447099 |
atcaccattttca |
36447087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 36469649 - 36469537
Alignment:
| Q |
181 |
agtttgaatgtatgtatctccatgggataagatagttagtacgaaccaatagaatgctttcaaaacgtcactttcagccaatagtaagtagacatacctc |
280 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||| |
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| T |
36469649 |
agtttgaatgtatgtatctccatgggatgagatagttagtacgaaccaatagcatgctttcaaaacgtcactttcagccaatagcaagtagacctaactc |
36469550 |
T |
|
| Q |
281 |
atcaccattttca |
293 |
Q |
| |
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||||||||||||| |
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| T |
36469549 |
atcaccattttca |
36469537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 184 - 310
Target Start/End: Complemental strand, 36412985 - 36412859
Alignment:
| Q |
184 |
ttgaatgtatgtatctccatgggataagatagttagtacgaaccaatagaatgctttcaaaacgtcactttcagccaatagtaagtagacatacctcatc |
283 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||| |||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
36412985 |
ttgaatgcatgtatctccatgggatgagatagctagtatgaaccaatagtatgctttcaaaatgtcactttcagccaatagaaagtagccatacctcatc |
36412886 |
T |
|
| Q |
284 |
accattttcaatctttcatagcctttg |
310 |
Q |
| |
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|||||||||||| |||||||||||||| |
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| T |
36412885 |
accattttcaatttttcatagcctttg |
36412859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 36437835 - 36437723
Alignment:
| Q |
181 |
agtttgaatgtatgtatctccatgggataagatagttagtacgaaccaatagaatgctttcaaaacgtcactttcagccaatagtaagtagacatacctc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||| |
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| T |
36437835 |
agtttgaatgtatgtatctccatgggatgagatagctagtatgaaccaatagcatgctttcaaaatgtcactttcagccaatagcaagtagacataactc |
36437736 |
T |
|
| Q |
281 |
atcaccattttca |
293 |
Q |
| |
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||| ||||||||| |
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|
| T |
36437735 |
atctccattttca |
36437723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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