View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_low_14 (Length: 297)
Name: NF5910_low_14
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 34674533 - 34674800
Alignment:
| Q |
19 |
acactgacaatgcatattcccttttctgtagaatgtaatacaaacatacctgcgcaacccaatgatgatatgtattgcttatattggtcctcctccaagc |
118 |
Q |
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| T |
34674533 |
acactgacaatacatattcccttttctgtagaatgtaatacaaacatacctgcgcaacccaatgatgatatttattgcttatattggtcctcctccaagc |
34674632 |
T |
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| Q |
119 |
ttccaaatcaaaaatgttcatgccataggcccaagcacattcgttgggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaac |
218 |
Q |
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| T |
34674633 |
ttccaaatcaaaaatgttcatgccataggcccaagcacattcgttgggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaac |
34674732 |
T |
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| Q |
219 |
cttttcgacatcacaaacttgtcttctccattgcatgtttccactgctccattcacttttccattcat |
286 |
Q |
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| T |
34674733 |
cttttcgacatcacaaacttgtcttctccattgcatgtttccactgctccattcacttttccattcat |
34674800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 286
Target Start/End: Original strand, 55869914 - 55870136
Alignment:
| Q |
64 |
atacctgcgcaacccaatgatgatatgtattgcttatattggtcctcctccaagcttccaaatcaaaaatgttcatgccataggcccaagcacattcgtt |
163 |
Q |
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| T |
55869914 |
atacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatt |
55870013 |
T |
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| Q |
164 |
gggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccact |
263 |
Q |
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| T |
55870014 |
tggatcaaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctact |
55870113 |
T |
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| Q |
264 |
gctccattcacttttccattcat |
286 |
Q |
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||||| || |||||||||||||| |
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| T |
55870114 |
gctccgttgacttttccattcat |
55870136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 31536458 - 31536355
Alignment:
| Q |
180 |
gatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccactgctccattcacttttc |
279 |
Q |
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|||||||||||||| || |||| |||||| ||||||||||| || || ||||||| || ||||| || ||| ||| ||| ||| ||||||| ||||||| |
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| T |
31536458 |
gatattagagggtgggagaagtacaaatagcttttcaacctctttgagatcacaagtttatcttcccctttgtatggttctactactccattgacttttc |
31536359 |
T |
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| Q |
280 |
catt |
283 |
Q |
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|||| |
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| T |
31536358 |
catt |
31536355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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