View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_low_2 (Length: 599)
Name: NF5910_low_2
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 580
Target Start/End: Complemental strand, 5685259 - 5684690
Alignment:
| Q |
11 |
cagagaacacaaataaaatactattattaaatttcctaatacatcttgtataatatataatagcatatgctaaagagaaagaattgatattatgataaag |
110 |
Q |
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| T |
5685259 |
cagagaacacaaataaaatactattattaaatttcctaatacatcttgtataatatataatagcatatgctaaagagaaacaattgatattatgataaag |
5685160 |
T |
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| Q |
111 |
tgtgtcatgggaaatacctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacag |
210 |
Q |
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| T |
5685159 |
tgtgtcatgggaaatacctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacag |
5685060 |
T |
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| Q |
211 |
ttcttccaggcaaaagttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctcataggtcactccagtagttggaatgaa |
310 |
Q |
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| T |
5685059 |
ttcttccaggcaaaagttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctcataggtcactccagtagttggaatgaa |
5684960 |
T |
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| Q |
311 |
ataaggatcagaaggtacatcatttgcataaactttattgttaccaagtattaaaccaacaccaccagctctttgaacttccaaacnnnnnnncactctt |
410 |
Q |
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| T |
5684959 |
ataaggatcagaaggtacatcatttgcataaactttattgttaccaagtattaaaccaacaccaccagctctttgaacttccaaactttttttcactctt |
5684860 |
T |
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| Q |
411 |
ccaccttgccctctcatgcacaaaactatttttcccttgaccttgcttggatcaagggtattgtctaggcaataactgcatcatgaaattaatttattat |
510 |
Q |
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| T |
5684859 |
ccaccttgccctctcatgcacaaaactatttttcccttgaccttgcttggatcaagggtattgtctaggcaataactgcatcatgaaattaatttattat |
5684760 |
T |
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| Q |
511 |
aagtttgacaacataaatttgtaagagataaaactagaaataaaaagtacctagagtttgcacttagtat |
580 |
Q |
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| T |
5684759 |
aagtttgacaacataaatttgtaagagataaaactagaaataaaaagtacctagagtttgcacttagtat |
5684690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 126 - 499
Target Start/End: Complemental strand, 5697314 - 5696941
Alignment:
| Q |
126 |
acctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
225 |
Q |
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| T |
5697314 |
acctttagaatattagggtcaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
5697215 |
T |
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| Q |
226 |
gttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctcataggtcactccagtagttggaatgaaataaggatcagaagg |
325 |
Q |
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| T |
5697214 |
gttgtgccattggattaggagaagaatgaatatattgaacaagttttaaggtattctcataggtcactccagtggcaggaatgaaataaggatcagaagg |
5697115 |
T |
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| Q |
326 |
tacatcatttgcataaactttattgttaccaagtattaaaccaacaccaccagctctttgaacttccaaacnnnnnnncactcttccaccttgccctctc |
425 |
Q |
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| T |
5697114 |
tacatcatttgcatgagttttattgttcccaaggataattccaacaccaccagctctttgaacttcaaaacttttgttcagtcttccaccttgtcctctc |
5697015 |
T |
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| Q |
426 |
atgcacaaaactatttttcccttgaccttgcttggatcaagggtattgtctaggcaataactgcatcatgaaat |
499 |
Q |
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| T |
5697014 |
atgcacaaaactatcttccccttgaccttgcttggatcaagggtattgtcttggcaataactgcatcatgaaat |
5696941 |
T |
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