View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_low_20 (Length: 222)
Name: NF5910_low_20
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19137055 - 19137266
Alignment:
| Q |
1 |
atagtctatttttgtcatataaacttagaggttataagtttatcatgggcttcgtcttgctaaaaacataggtatcgatgatttggtttgctactcggat |
100 |
Q |
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| T |
19137055 |
atagtctatttttgtcatataaacttagaggttataagtttatcatggtcttcgtcttgctaaaaacatgggtattgatgatttgttttgctactcggat |
19137154 |
T |
|
| Q |
101 |
tctatgctctccattaatctcattcagggggatacttcgcattaccatgtttatggtgttctcgttcaagatataaaagatcttatgaccactagtaact |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
19137155 |
tctatgctctccattaatctcattcagggagatacttcacattaccatgtttatgctgttctcgttcaggatataaaagatcttatgaccattagtaact |
19137254 |
T |
|
| Q |
201 |
tctcaattcatc |
212 |
Q |
| |
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|||||||||||| |
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| T |
19137255 |
tctcaattcatc |
19137266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 20736454 - 20736665
Alignment:
| Q |
1 |
atagtctatttttgtcatataaacttagaggttataagtttatcatgggcttcgtcttgctaaaaacataggtatcgatgatttggtttgctactcggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||| |
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| T |
20736454 |
atagtctatttttgtcatataaacttagaggttataagtttatcatggtcttcgtcttgctaaaaacatgggtattgatgatttgttttgctactcggat |
20736553 |
T |
|
| Q |
101 |
tctatgctctccattaatctcattcagggggatacttcgcattaccatgtttatggtgttctcgttcaagatataaaagatcttatgaccactagtaact |
200 |
Q |
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| T |
20736554 |
tctatgctctccattaatctcattcagggagatacttcacattaccatgtttatgctgttctcgttcaggatataaaagatcttatgaccattagtaact |
20736653 |
T |
|
| Q |
201 |
tctcaattcatc |
212 |
Q |
| |
|
|||||||||||| |
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| T |
20736654 |
tctcaattcatc |
20736665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 373021 - 373169
Alignment:
| Q |
62 |
aaaaacataggtatcgatgatttggtttgctactcggattctatgctctccattaatctcattcagggggatacttcgcattaccatgtttatggtgttc |
161 |
Q |
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||||| ||||||||| ||||||||||||| |||||| ||||| | || || |||||||| || || | ||| ||||||||||||||||| ||| | || |
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| T |
373021 |
aaaaaaataggtatcaatgatttggtttgttactcgaattctcttctttcaattaatcttatacatgcggacacttcgcattaccatgtatatactatta |
373120 |
T |
|
| Q |
162 |
tcgttcaagatataaaagatcttatgaccactagtaacttctcaattca |
210 |
Q |
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| ||||| || |||||||||||| ||||||| |||| |||||||||| |
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| T |
373121 |
tagttcatgacataaaagatcttttgaccaccggtaatctctcaattca |
373169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 31788750 - 31788852
Alignment:
| Q |
110 |
tccattaatctcattcagggggatacttcgcattaccatgtttatggtgttctcgttcaagatataaaagatcttatgaccactagtaacttctcaattc |
209 |
Q |
| |
|
|||| ||||||||| || ||||| | |||||||| |||||||||| |||||| || || || |||||||||||| || | || || || |||||||||| |
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|
| T |
31788750 |
tccactaatctcatccatggggagtcatcgcattatcatgtttatgctgttcttgtgcaggacataaaagatcttctggctaccagcaatttctcaattc |
31788849 |
T |
|
| Q |
210 |
atc |
212 |
Q |
| |
|
||| |
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|
| T |
31788850 |
atc |
31788852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 45124647 - 45124590
Alignment:
| Q |
66 |
acataggtatcgatgatttggtttgctactcggattctatgctctccattaatctcat |
123 |
Q |
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|||||||||| |||||||||| || ||||||||||| | ||||||||||||||||| |
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| T |
45124647 |
acataggtatagatgatttggcatgttactcggattccctcctctccattaatctcat |
45124590 |
T |
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