View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_low_4 (Length: 438)
Name: NF5910_low_4
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 23 - 424
Target Start/End: Complemental strand, 1463323 - 1462922
Alignment:
| Q |
23 |
taaactatttatgtcacaaccaattttattgagataaataaaattctaaactctcctttgagaatacagtatcttcactctagagatccattctcggaga |
122 |
Q |
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| T |
1463323 |
taaactatttatgtcacaaccaattttattgagataaataaaattctaaactctcctttgagaatacagtatcttcactctagagatccattctcggaga |
1463224 |
T |
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| Q |
123 |
gcaatgacaaacaaaaggatccatttacagagagaaatgacaaacaaaccaattgagagggcccaaaggatgcaatacatgaatgaaaaaagactaagtt |
222 |
Q |
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| T |
1463223 |
gcaatgacaaacaaaaggatccatttacagagagaaatgacaaacaaaccaattgagagggcccaaaggatgcaatacatgaatgaaaaaagactaagtt |
1463124 |
T |
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| Q |
223 |
ctaaaactggagtgaaatattgtatcataattatgaatatgatcccaaagatgatgcttttataagagtgtcttgtcacagtagaaaataactctagttg |
322 |
Q |
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| T |
1463123 |
ctaaaactggagtgaaatattgtatcataattatgaatatgatcccaaagatgatgcttttaaaagagtgtcttgtcgcaatagaaaataactctagttg |
1463024 |
T |
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| Q |
323 |
aaaataggtaacaataaagaagatcgagcccacgatgatattctgatatttttccatgaagttagcaccatcagatgttgtctgtagtgtagggaagaaa |
422 |
Q |
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| T |
1463023 |
aaaataggtaacaataaagaagatcgagcccacgatgatattctgatatttttccatgaagttagcaccatcagttgttgtctgtagtgtagggaagaaa |
1462924 |
T |
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| Q |
423 |
ac |
424 |
Q |
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| T |
1462923 |
ac |
1462922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 420
Target Start/End: Original strand, 1429972 - 1430144
Alignment:
| Q |
248 |
cataattatgaatatgatcccaaagatgatgcttttataagagtgtcttgtcacagtagaaaataactctagttgaaaataggtaacaataaagaagatc |
347 |
Q |
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|||||||||||||||||||||||||||| || ||| | ||| ||| ||||| ||||||||| || || ||||| | ||||||||| | ||| |||| |
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| T |
1429972 |
cataattatgaatatgatcccaaagatgctggtttgaaaagggtgcattgtcgtgatagaaaatagctttatttgaataaaggtaacaagatagacgatc |
1430071 |
T |
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| Q |
348 |
gagcccacgatgatattctgatatttttccatgaagttagcaccatcagatgttgtctgtagtgtagggaaga |
420 |
Q |
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| T |
1430072 |
gactgcatgagaatattctgatattttgccatgaagtttgcaccatatgatgttgtctttagggtagggaaga |
1430144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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