View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5910_low_6 (Length: 398)
Name: NF5910_low_6
Description: NF5910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5910_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 1463833 - 1463461
Alignment:
| Q |
14 |
gaagaacaataaggcgtaaaaatatgtccacattttaggttgtattaccatttcacagcataaaatgaggcgtgccttatgaagctgggttgggagatgc |
113 |
Q |
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| T |
1463833 |
gaagaataatgaggcgtaaaattatgtcctcattttaggttgtattaccatttcacagcataaaatgaggcgtgcc----------gggttgggagatgc |
1463744 |
T |
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| Q |
114 |
gttcgggaacatcgtgcgtgttatggtgcagagtaatggaagggaaatacaatgaggtgtgccttagaaagaagattgactgaactctgcattgagtaaa |
213 |
Q |
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| T |
1463743 |
gttcgggaacatcgtgcaagttatggtgcagagtaatggaagggaaatacaatgaggtgtgccttagaaagaagattgactgaactctgcattgagtaaa |
1463644 |
T |
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| Q |
214 |
ccatgaggcaatagaaagaaatgatattttgagcatgccattctgtgattacttcagagaagaggttgaaacaactctacatgtgataaaaaatgttctc |
313 |
Q |
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| T |
1463643 |
ccatgaggcaatagaaagaaatgatattttgagcatgccattctgtgattacttcagagaagaggttgaaacaactctacatgtgataaaaaatgttctc |
1463544 |
T |
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| Q |
314 |
catccaaaagtgaccaatttgttgtatttgcttacataattagcctcattcaatgaggtagaaacaatatttttgattgcaat |
396 |
Q |
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| T |
1463543 |
catccaaaagtgaccaatttgttgtatttgcttacataattagcctcattcaatgaggtagaaacaatatttttgattgcaat |
1463461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 1462166 - 1462119
Alignment:
| Q |
349 |
ataattagcctcattcaatgaggtagaaacaatatttttgattgcaat |
396 |
Q |
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| T |
1462166 |
ataattagcctgattcaatgaggtagaaacaatattttagattgcaat |
1462119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 1536348 - 1536394
Alignment:
| Q |
241 |
tttgagcatgccattctgtgattacttcagagaagaggttgaaacaa |
287 |
Q |
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| T |
1536348 |
tttgagcatcccgttctgtgattacttcagagaagaggtcgaaacaa |
1536394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 1535990 - 1536023
Alignment:
| Q |
133 |
gttatggtgcagagtaatggaagggaaatacaat |
166 |
Q |
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| T |
1535990 |
gttatggtgcagagtaatggaagggaaatacaat |
1536023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 394
Target Start/End: Complemental strand, 26174661 - 26174572
Alignment:
| Q |
305 |
aatgttctccatccaaaagtgaccaatttgttgtatttgcttacataattagcctcattcaatgaggtagaaacaatatttttgattgca |
394 |
Q |
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| T |
26174661 |
aatgttctccgtccaaaagtgaccaacttgttatacttgcttacataattagcctgattcaatgtggtagaaacaaaatttcagattgca |
26174572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 26413217 - 26413262
Alignment:
| Q |
75 |
aaaatgaggcgtgccttatgaagctgggttgggagatgcgttcggg |
120 |
Q |
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| T |
26413217 |
aaaatgaggcgtgccttatgaagttgggttgggagctgcattcggg |
26413262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 26413776 - 26413821
Alignment:
| Q |
245 |
agcatgccattctgtgattacttcagagaagaggttgaaacaactc |
290 |
Q |
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| T |
26413776 |
agcatgccattatgtgattactgcagagaagaggtcaaaacaactc |
26413821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 2765292 - 2765339
Alignment:
| Q |
252 |
cattctgtgattacttcagagaagaggttgaaacaactctacatgtga |
299 |
Q |
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| T |
2765292 |
cattctgtgactactgcagaaaggaggttgaaacaactctacatgtga |
2765339 |
T |
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