View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911-Insertion-1 (Length: 972)
Name: NF5911-Insertion-1
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911-Insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 613 - 958
Target Start/End: Original strand, 34606469 - 34606815
Alignment:
| Q |
613 |
taacatttacatttaactttaatggagtaaacaggactcactttattaaaaaagtaccgaagacaacaacctctacacactaaacgaagatttgggtata |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34606469 |
taacatttacatttaactttaatggagtaaacaggactcactttattaaaa-agtaccgaagagaacaacctctacacactaaacgaagatttgggtata |
34606567 |
T |
|
| Q |
713 |
cagatactccacaacatcatacaaaattacataacacaaacattaataaaagtaactaataatcttcaggagccaaaggttgatgaatcggattagtatg |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34606568 |
cagatactccacaacatcatacaaaattacataacacaaacattaataaaagtaactaataatcttcaggagccaaaggttgatgaatcggattagtatg |
34606667 |
T |
|
| Q |
813 |
aggaggctcaactggaaccataatatattcatataaaagtgctgctattgcagctccaagaaatggacccacccaaaagatccaatgatagtgccatct- |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34606668 |
aggaggctcaactggaaccataatatattcatataaaagtgctgctattgcagctccaagaaatggacccacccagaagatccaatgatagtgccatctc |
34606767 |
T |
|
| Q |
912 |
caacccactaaagcaggtccaaaag-cctagcaaggttcatgcatgct |
958 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
34606768 |
caacccactaaagcaggtccaaaagccctagcagggttcatgcatgct |
34606815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 391 - 561
Target Start/End: Original strand, 34606227 - 34606397
Alignment:
| Q |
391 |
agaatgtcattatgatccaaccctctcattgagagatacgagttttatttttattgaatctaataaaatttatttgatcaaaatcgacccgatatagttt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34606227 |
agaatgtcattatgatccaaccctctcattgagagatacgagttttagttttattcaatctaataaaatttatttgatcaaaatcgacccgatatagttt |
34606326 |
T |
|
| Q |
491 |
atatacaacgtgcacgcaccacaacccaaccatgtacctttataaaccacaaataacttatattcaaaaca |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34606327 |
atatacaacgtgcacgcaccacaacccaaccatgtacctttataaaccacaaataacttatattcaaaaca |
34606397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 174 - 326
Target Start/End: Original strand, 34606027 - 34606178
Alignment:
| Q |
174 |
gtttggttgaactcaaaccaaaaactcaagagtagtttggttctcattcataaagaaattctaattttaatccgtggtcctttgaagaaaattataaaca |
273 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34606027 |
gtttggttgaactcaaaccaaaaactca-gagtagtttggttctcatttataaagaaattctaattttaatccgtggtcctttgaagaaaataataaaca |
34606125 |
T |
|
| Q |
274 |
cttgttcgttttaaagtagtcaagatttttaggtgtcaaatctataagtatct |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34606126 |
cttgttcgttttaaagtagtcaagatttttaggtgtcaaatgtataagtatct |
34606178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University