View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911-Insertion-10 (Length: 355)
Name: NF5911-Insertion-10
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 355
Target Start/End: Complemental strand, 19470075 - 19469729
Alignment:
| Q |
9 |
gattcaagtacttcctcccaccaaatcctatcaggaacctgaagagccaaatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagagg |
108 |
Q |
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| T |
19470075 |
gattcaagtacttcctctaaccaaatcctatcaggaacctgaagagccaaatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagagg |
19469976 |
T |
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| Q |
109 |
aaagcacacttgttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttctccagcactgatgatcttcttcagt |
208 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| | |
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| T |
19469975 |
aaagcacacttgttaaaagttttacttaacctgaaaacatctaataatattctctagataagttccaggttcttcagcagcactaatgatcttcttcact |
19469876 |
T |
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| Q |
209 |
aacccttcattatcactcaaatcccactatgcgaaaacagcagtccttgaccaaaatcatagtcttatacaaagcataaccctaagcttcttctggttga |
308 |
Q |
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||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19469875 |
aacccttcattatcactgaaattccactgtgcgaaaacagcagtccttgaccaaaatcatagtcttatacaaagcataaccctcagcttcttctggttga |
19469776 |
T |
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| Q |
309 |
acatagtcatccctcttccaggttgttgttgctaaaacatgtccatc |
355 |
Q |
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| T |
19469775 |
acaaagtcatccctcttccaggttgttgttgctaaaacatgtccatc |
19469729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 121 - 355
Target Start/End: Original strand, 47865355 - 47865589
Alignment:
| Q |
121 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttctccagcactgatgatcttcttcagtaacccttcatta |
220 |
Q |
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| T |
47865355 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcatta |
47865454 |
T |
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| Q |
221 |
tcactcaaatcccactatgcgaaaacagcagtccttgaccaaaatcatagtcttatacaaagcataaccctaagcttcttctggttgaacatagtcatcc |
320 |
Q |
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| T |
47865455 |
tcactcaaactccactgtgcgaaaacagcagtccttgaccaaaatcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatcc |
47865554 |
T |
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| Q |
321 |
ctcttccaggttgttgttgctaaaacatgtccatc |
355 |
Q |
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| T |
47865555 |
ctctttcaggttgtcgttgctaaaacatgtccatc |
47865589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 47864368 - 47864488
Alignment:
| Q |
9 |
gattcaagtacttcctcccaccaaatcctatcaggaacctgaagagccaaatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagagg |
108 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47864368 |
gattcaagcacttcctccaaccaaatcctatcaggaacctgaagagccaaatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagagg |
47864467 |
T |
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| Q |
109 |
aaagcacacttgttaaaagtt |
129 |
Q |
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||| ||||||| ||||||||| |
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| T |
47864468 |
aaatcacacttattaaaagtt |
47864488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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