View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911-Insertion-11 (Length: 315)

Name: NF5911-Insertion-11
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911-Insertion-11
NF5911-Insertion-11
[»] chr7 (1 HSPs)
chr7 (7-315)||(30955178-30955485)
[»] chr3 (1 HSPs)
chr3 (191-271)||(32706010-32706090)
[»] chr1 (2 HSPs)
chr1 (191-269)||(30882823-30882901)
chr1 (60-105)||(48632327-48632372)
[»] chr4 (1 HSPs)
chr4 (194-274)||(35530302-35530382)
[»] chr8 (2 HSPs)
chr8 (60-110)||(15131738-15131788)
chr8 (55-105)||(14469733-14469783)
[»] chr2 (3 HSPs)
chr2 (60-110)||(32200614-32200664)
chr2 (60-111)||(17651627-17651678)
chr2 (60-106)||(41849370-41849416)
[»] chr6 (1 HSPs)
chr6 (60-105)||(19294695-19294740)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 30955178 - 30955485
Alignment:
Q  7 caatatcaaaatgcaaaccaggacctttcataattttaaggtagataatgtacgaagcacggacccctctagcattaggtgtgtcgcggtgtccgacacg 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955178 caatatcaaaatgcaaactaggacctttcataattttaaggtagataatgtacgaagcacggacccctctagcattaggtgtgtcgcggtgtccgacacg 30955277  T
Q  107 tgtcaatgttcacacttgtacgacactcatatgacaccgtgtcggactacctcaaactggtatcctaatttatttatttttgtatcgacacttcttgggt 206  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955278 tgtcaatgttcacacttgtatgacactcatatgacac-gtgtcggactacctcaaactggtatcctaatttatttatttttgtatcgacacttcttgggt 30955376  T
Q  207 cggtgtctgacacttgtatgacactcataccacacatgtcgaacaactcgaacaagtgtcccatttttcttcttctttcctttgacacgcctatgtagca 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30955377 cggtgtctgacacttgtatgacactcataccacacatgtcgaacaactcgaacaagtgtcccatttttcttcttctttgctttgacacgcctatgtagca 30955476  T
Q  307 gtgttagta 315  Q
    |||||||||    
T  30955477 gtgttagta 30955485  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 32706010 - 32706090
Alignment:
Q  191 tcgacacttcttgggtcggtgtctgacacttgtatgacactcataccacacatgtcgaacaactcgaacaagtgtcccatt 271  Q
    ||||||||| |||| ||| |||| ||||| ||||||| |||||||| |||||||| | |||||||| ||||||||||||||    
T  32706010 tcgacacttgttggatcgttgtccgacacctgtatgatactcatacaacacatgttggacaactcggacaagtgtcccatt 32706090  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 30882823 - 30882901
Alignment:
Q  191 tcgacacttcttgggtcggtgtctgacacttgtatgacactcataccacacatgtcgaacaactcgaacaagtgtccca 269  Q
    |||||||||||||  |||| ||||||||| ||| ||||||||||||  ||| ||||| |||||||| ||||||||||||    
T  30882823 tcgacacttcttgaatcggggtctgacacctgtttgacactcatacatcacgtgtcggacaactcggacaagtgtccca 30882901  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 48632327 - 48632372
Alignment:
Q  60 gaagcacggacccctctagcattaggtgtgtcgcggtgtccgacac 105  Q
    ||||||||||| ||||||| | |||| |||||||||||||||||||    
T  48632327 gaagcacggacacctctaggactaggcgtgtcgcggtgtccgacac 48632372  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 35530382 - 35530302
Alignment:
Q  194 acacttcttgggtcggtgtctgacacttgtatgacactcataccacacatgtcgaacaactcgaacaagtgtcccattttt 274  Q
    ||||| ||||||||||||||  |||| | ||||||||| |||| |||| ||||| |||||||| |||||||||||| ||||    
T  35530382 acactccttgggtcggtgtcctacacctatatgacacttatacaacacgtgtcggacaactcggacaagtgtcccaatttt 35530302  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 15131738 - 15131788
Alignment:
Q  60 gaagcacggacccctctagcattaggtgtgtcgcggtgtccgacacgtgtc 110  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||||||||||    
T  15131738 gaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacgtgtc 15131788  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 14469733 - 14469783
Alignment:
Q  55 tgtacgaagcacggacccctctagcattaggtgtgtcgcggtgtccgacac 105  Q
    |||| |||||| |||| ||||||||| ||||||||||| ||||||||||||    
T  14469733 tgtatgaagcatggacacctctagcactaggtgtgtcgtggtgtccgacac 14469783  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 32200614 - 32200664
Alignment:
Q  60 gaagcacggacccctctagcattaggtgtgtcgcggtgtccgacacgtgtc 110  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||||||||||    
T  32200614 gaagcacggacacctctaggactaggcgtgtcgcggtgtccgacacgtgtc 32200664  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 17651678 - 17651627
Alignment:
Q  60 gaagcacggacccctctagcattaggtgtgtcgcggtgtccgacacgtgtca 111  Q
    ||||||||||| ||| ||| |||||| |||||||||||||||||||| ||||    
T  17651678 gaagcacggacacctttaggattaggcgtgtcgcggtgtccgacacgcgtca 17651627  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 41849416 - 41849370
Alignment:
Q  60 gaagcacggacccctctagcattaggtgtgtcgcggtgtccgacacg 106  Q
    ||||||||||| ||||||| |||||| ||||||||||||| ||||||    
T  41849416 gaagcacggacacctctagaattaggcgtgtcgcggtgtcagacacg 41849370  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 19294740 - 19294695
Alignment:
Q  60 gaagcacggacccctctagcattaggtgtgtcgcggtgtccgacac 105  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||||    
T  19294740 gaagcaccgacacctctaggattaggcgtgtcgcggtgtccgacac 19294695  T

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