View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911-Insertion-2 (Length: 910)
Name: NF5911-Insertion-2
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 708
Target Start/End: Original strand, 1508187 - 1508881
Alignment:
| Q |
8 |
actttgaagaggtaaaaatgtcctcgattgatcttatatcctagatgnnnnnnnagccttaggttatatatatatcaatggtgctcgattggaagtggaa |
107 |
Q |
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| T |
1508187 |
actttgaagaggtaaaaatgtcctcgattgatcttatatcctagatgtgtttttagccttaggttatatatat--caatggtgctcgattgaaagtggaa |
1508284 |
T |
|
| Q |
108 |
catcacaactcctaatgttgttcaacacatgacatgacaattgataaatcttctttggagttgttgttgtttacgaactttggataagtagaaatagtca |
207 |
Q |
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| T |
1508285 |
catcacaactcctaatgttgttcaacacatgacatgacaattgataaatcttctttggagttgttgtt---tgcgaactttggataaatagaaatagtca |
1508381 |
T |
|
| Q |
208 |
tgtgtttaataggaagtctttgattggtgatcaacttattcgtctagtaatgaaccatggtaacgaaccaaaccaatttcatgacatccatgtgggttct |
307 |
Q |
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| T |
1508382 |
tgtgtttaataggaagtctttgattggtgatcaacttattcgtctagtaatgaaccatggtaacgaaccaagccaatttcatcacatccatgtgggttct |
1508481 |
T |
|
| Q |
308 |
tagtcctaaccctcccttgagacacaacatatagatttcttggattcctccaccacacgatcattataaggttaatgttgatgggtgtcatcagggattt |
407 |
Q |
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| T |
1508482 |
tagtcctaaccctcccttgagacacaacatatagatttcttggattcctccaccacacgatcattataaggttaatgttgatgggtgtcatcagggattt |
1508581 |
T |
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| Q |
408 |
atacttgtggatgtttgattagagagagactcatggtaagttcatttgtagtttctacaatagaattgattcatgctctgcattgtagatataattctaa |
507 |
Q |
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| T |
1508582 |
atacttgtggatgtttgattagagagagactcatggtaagttcatttgtagtttctacaatagaattgatttatgctctgcattgtcgatataactctaa |
1508681 |
T |
|
| Q |
508 |
actcttcacattaaaatataaatgacaaatcagtttaatatcaaatacattattttttagatgtcttcttcnnnnnnnnnnncattattttttagatgga |
607 |
Q |
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| T |
1508682 |
actcttcacattgaaatataaatgacaaatcagtttaatatcaaatacattattttttagatgtcttcttc-taaaaaaaaacattattttttagatgga |
1508780 |
T |
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| Q |
608 |
ttctctagtcgtggttactgtggtcaattccaaatactttttccttaagaggagatacctccgatgtcatgtgtatcgtgcgagtaatcagtgtgttgac |
707 |
Q |
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| T |
1508781 |
ttctctagtcgtggttactgtggtcaattccaaatactttttccttaagaggagatacccccgatgtcatgtgtatcatgcaactaatcagtgtgttgac |
1508880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 761 - 910
Target Start/End: Original strand, 1508921 - 1509073
Alignment:
| Q |
761 |
agacagacgaaatgacaattaacgtttgagaactcacacacac--gagtaaagaagccaggtttcaaaccccgcgcttgatgtcaaacttaacaatgttg |
858 |
Q |
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| T |
1508921 |
agacaaacgaaatgacaataaacatttgagaactcacacacacatgagtaaagaagccaggtttcaaaccctgcgcttgatgtccaacttaacaatgttg |
1509020 |
T |
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| Q |
859 |
atatatttttcacttgatcttgtgggcaattgaaggtgtct-aagaaggttgg |
910 |
Q |
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| T |
1509021 |
atatatttttcacttgatcttgtgagcaattgaaggtgtctaaagaaggttgg |
1509073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 196 - 392
Target Start/End: Original strand, 17722437 - 17722618
Alignment:
| Q |
196 |
tagaaatagtcatgtgtttaataggaagtctttgattggtgatcaacttattcgtctagtaatgaaccatggtaacgaaccaaaccaatttcatgacatc |
295 |
Q |
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| T |
17722437 |
tagaaatagtcatgtgtttaatacgaagtctttgattggtaatcaactttttcgtcttgtaatgaacca------------aagccaatttcattacaca |
17722524 |
T |
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| Q |
296 |
catgtgggttcttagtcctaaccctcccttgagacacaacatatagatttcttggattcctccaccacacgatcattataagg-ttaatgttgatggg |
392 |
Q |
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| T |
17722525 |
catgtggattctcaggctca----tcccttgagacacaacatagagatttcttggattgctccaccacatgatcattataaggtttaatgttgatggg |
17722618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 47915496 - 47915463
Alignment:
| Q |
209 |
gtgtttaataggaagtctttgattggtgatcaac |
242 |
Q |
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| T |
47915496 |
gtgtttaataggaagtctttgattggtaatcaac |
47915463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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