View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911-Insertion-3 (Length: 810)
Name: NF5911-Insertion-3
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911-Insertion-3 |
 | |
|
| [»] scaffold0062 (1 HSPs) |
| | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
| [»] scaffold0205 (2 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 649; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 8 - 680
Target Start/End: Complemental strand, 28045300 - 28044628
Alignment:
| Q |
8 |
aatttcttccctagatctcactcagaaacagaacagagtgtctgctttgataccaattgaaatttcggcacgtagtataataacgaattatgtacacaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28045300 |
aatttcttccctagatctcactcagaaacagaacagagtgtctgctttgataccaattgaaatttcggcacgtagtataataacgaattatgtacacaat |
28045201 |
T |
|
| Q |
108 |
gttatgactagtcggatgtctcgcaagaagtcagaacatcgtgacaacaaatcacaaataaccaatataattgaaggacaaaaagtaaataactcaggtt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28045200 |
gttatgactagtcagatgtctcgcaagaagtcagaacatcgtgacaacaaatcacaaataaccaatataattgaaggacaaaaagtaaataactcaggtt |
28045101 |
T |
|
| Q |
208 |
atttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28045100 |
atttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaa |
28045001 |
T |
|
| Q |
308 |
gtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactcctagtcctaaatatgagaacccactcacttcctcttag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28045000 |
gtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactcctagtcctaaatatgagaacccactcacttcctcttag |
28044901 |
T |
|
| Q |
408 |
tcacaaaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagagaattcaaagca |
507 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
28044900 |
tcacagaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaactcgtgcttaaaagcttagaggattcaaagta |
28044801 |
T |
|
| Q |
508 |
ttacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgactcttttgcaa |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28044800 |
ttacaactcaattacaaagtccaactctaatatcaaagaaatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgactcttttgcaa |
28044701 |
T |
|
| Q |
608 |
ttgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgcac |
680 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28044700 |
ttgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgcac |
28044628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 383 - 638
Target Start/End: Complemental strand, 28044054 - 28043799
Alignment:
| Q |
383 |
tgagaacccactcacttcctcttagtcacaaaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaa-tcaaatcgtg |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||| || |||| ||||| |
|
|
| T |
28044054 |
tgagaacccactcacttcctcttagtcacagaccagtgaccgtccttgaaatctttaacaaatatggagacactcaattagaaaaaaaaatcaactcgtg |
28043955 |
T |
|
| Q |
482 |
cttaaaagcttagaga-attcaaagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacaga |
580 |
Q |
| |
|
|||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
28043954 |
cttaaaagcttatagagattcagagtattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtggcacacaaataacaaagataga |
28043855 |
T |
|
| Q |
581 |
ctgaaaccctagatgactcttttgcaattgtagcttcagtgaataattaggtcttctg |
638 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
28043854 |
ctgaaaccctagatgactc--ttgcaattgtgactttagtgaataattaggtcttctg |
28043799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 216 - 661
Target Start/End: Original strand, 32668651 - 32669097
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcac |
315 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||| ||| || ||||| ||||| ||||||||||||||||| ||| |||||| | || |
|
|
| T |
32668651 |
acccagttcggtgcaaagtcacctacatctgggg-ctaccaaa-caggaaggaaatttactatggtagtatcaattcgaagaatacataaaaaccatc-- |
32668746 |
T |
|
| Q |
316 |
aagctc-actaacttctcacttaatcactacccgtggtatttctacctaagactc--ctagtcctaaatatgagaaccc--actcacttcctcttagtca |
410 |
Q |
| |
|
| || |||| |||||||||||||||||||||||| ||||||||||||||||| |||||| || | |||||| || ||||||||||||||| ||| |
|
|
| T |
32668747 |
--ggtctactagcttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcatagaaatgagattccctactcacttcctcttaatca |
32668844 |
T |
|
| Q |
411 |
caaacc-agtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcat |
508 |
Q |
| |
|
||| || ||||| ||||| || | | |||||| ||| |||||| |||||| || ||||||| | ||||||||| | | || |||| ||||| || | |
|
|
| T |
32668845 |
caatcccagtgatcgtccttaaagtaat-aacaaaaatgaagacacactcctaaaataagaatcgactcgtgcttacatgatttgagagattcagagttt |
32668943 |
T |
|
| Q |
509 |
tacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagact-gaaaccctagatgactcttttg-ca |
606 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |||||||||||| | |||||||||| |||||||||| |||||||| ||||||| ||| | |
|
|
| T |
32668944 |
tacaactcaactacaaagtccaactcaaatatcaaagtgatatgagagtggctcacaaataac-aagacagactaaaaaccctaattgactctcttgtaa |
32669042 |
T |
|
| Q |
607 |
attgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatg |
661 |
Q |
| |
|
| || |||||| |||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
32669043 |
aatgcagcttccgtgacaaattaggtcttaagtcttcctttatatagcctgaatg |
32669097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 219 - 533
Target Start/End: Original strand, 12464167 - 12464485
Alignment:
| Q |
219 |
cagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcacaag |
318 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||| || ||| || ||||| ||||| |||||||||||||| || |||| |||||| |||| | |
|
|
| T |
12464167 |
cagttcggtgcaacttcacctacatgtgggagctaccgagtcaggaaggaaattcactaaagtagtatcaattcaaaacatacataaaaatctt----tg |
12464262 |
T |
|
| Q |
319 |
ctc-actaacttctcacttaatcactacccgtggtatttctacctaaga--ctcctagtcctaaatatgagaac--ccactcacttcctcttagtcacaa |
413 |
Q |
| |
|
|| |||| |||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||| || |||||||||||||| ||| || |
|
|
| T |
12464263 |
gtctactagcttctcacttaatcactacccgtgcaatttctacctatgactctcctagtcctggatatgagaacctccgctcacttcctcttaatcataa |
12464362 |
T |
|
| Q |
414 |
-accagtgacaatccttgaaatccttaacaaatatggagacactctcct-agaaaaagaatcaaatcgtgcttaaaagctt--agagaattcaaagcatt |
509 |
Q |
| |
|
|||||| |||||| | | ||||||| |||||||||||||||| | ||||||||| ||||||||| |||||| || || ||| ||| ||| |
|
|
| T |
12464363 |
tcccagtggttgtccttgtagt-aataacaaaaatggagacactctcctaatcctaagaatcaactcgtgcttacaagctttgagtgatttctaagaatt |
12464461 |
T |
|
| Q |
510 |
acaactcaattacaaagtccaact |
533 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
12464462 |
acaactcaactacaaagtccaact |
12464485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 468 - 604
Target Start/End: Original strand, 26895849 - 26895985
Alignment:
| Q |
468 |
agaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaa |
566 |
Q |
| |
|
|||||||| ||||||||| |||||| ||| |||||||| ||||||||||| |||||||| ||||| |||||||| || ||| ||||||| | ||||| |
|
|
| T |
26895849 |
agaatcaactcgtgcttacaagctttgagtgattcaaagttttacaactcaactacaaagttcaacttcaatatcaa-gaaatacgagagtggctcacaa |
26895947 |
T |
|
| Q |
567 |
ataacaaagacagactgaaaccctagatgactcttttg |
604 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
26895948 |
ataacaaagacaaactaaaaccctaattgactcttttg |
26895985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 582
Target Start/End: Complemental strand, 13730440 - 13730183
Alignment:
| Q |
328 |
ttctcacttaatcactacccgtggtatttctacctaag--actcctagtcctaaatatgagaaccc--actcacttcctcttagtcacaaacc-agtgac |
422 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||| ||| |||||||| |||||| |||||| || | ||| |
|
|
| T |
13730440 |
ttctcacttaatcattacccgtctaatttctacctaaggcactcctagtcctagatatgagatcccctactcactttctcttaatcacaatcccaatgat |
13730341 |
T |
|
| Q |
423 |
aatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaactcaatta |
521 |
Q |
| |
|
|||| || | |||| | ||||||||||||||||| | |||||| || || |||||| |||||| |||| ||| | || |||||||||| || |
|
|
| T |
13730340 |
cgtcctaaaagtaac-aacagaaatggagacactctcctaaactaagaattaactcttgcttacaagctttgagagatttagagatttacaactcagcta |
13730242 |
T |
|
| Q |
522 |
caaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagact |
582 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| | | ||||| |||||||||||||| |
|
|
| T |
13730241 |
caaagtcaaactctaatatcaaggagatatgagaggggctcacaa--aacaaagacagact |
13730183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 383
Target Start/End: Original strand, 26895600 - 26895762
Alignment:
| Q |
219 |
cagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcacaag |
318 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||| ||||||| |||||| ||||| ||| |||||||||||||||| ||||||| |||| | | || | |
|
|
| T |
26895600 |
cagtttggtgcaacttcacctacatctggggt-taccaagccagaaaggaaattcacaatagtagtatcaattcaaagcatacataataaccctc----g |
26895694 |
T |
|
| Q |
319 |
ctc-actaacttctcacttaatcactacccgtggtatttctacctaaga--ctcctagtcctaaatat |
383 |
Q |
| |
|
|| |||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
26895695 |
gtctactatcttctcacttaatcactactcgtgaaatttctacctaagactctcctagtcctagatat |
26895762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 13553337 - 13553439
Alignment:
| Q |
205 |
gttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatata |
304 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||||| | |||||||||||| | ||| || ||||| ||||||| |||||| | || |||||||| ||| |
|
|
| T |
13553337 |
gttatttgctatcccagttgggtgcaacatcacctacgtttgggggctaccatgccaggaaggaaattcactataatagtattattttgaagcatacata |
13553436 |
T |
|
| Q |
305 |
aaa |
307 |
Q |
| |
|
||| |
|
|
| T |
13553437 |
aaa |
13553439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 3904718 - 3904678
Alignment:
| Q |
327 |
cttctcacttaatcactacccgtggtatttctacctaagac |
367 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
3904718 |
cttctcacttaatcactacccgtgatatttctatctaagac |
3904678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 2401360 - 2401409
Alignment:
| Q |
320 |
tcactaacttctcacttaatcactacccgtggtatttctacctaagactc |
369 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||||| | ||||||| |
|
|
| T |
2401360 |
tcactaccttctcacctaatcactacccgtgatatttctatcaaagactc |
2401409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 73 - 678
Target Start/End: Complemental strand, 2383 - 1781
Alignment:
| Q |
73 |
cggcacgtagtataataacgaattatgtacacaatgttatgactagtcggatgtctcgcaagaagtcagaacatcgtgacaaca--aatcacaaataacc |
170 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| |||| ||| ||| |||||| |
|
|
| T |
2383 |
cggcacgtagta--ataaaaaattatgtacacaatgttatgaccagtcagatgtctcgcaagaagtcggaacatcgtgataacagtaataacagataacc |
2286 |
T |
|
| Q |
171 |
aatataattgaaggacaaaaagtaaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaa |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| |||||||||||||| ||| || |||| |
|
|
| T |
2285 |
aatataattgaaggacaaaaagtaaataactcaggttatttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagccaggaaagaaa |
2186 |
T |
|
| Q |
271 |
tccactatagtagtatcaattcgaagcatatataaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc- |
369 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2185 |
tccattatactagtatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactacctgtggtatttctacctaagactct |
2086 |
T |
|
| Q |
370 |
-ctagtcctaaatatgagaacccactcacttcctcttagtcacaaaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaa |
468 |
Q |
| |
|
||| ||||||||||||||| ||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2085 |
cctaatcctaaatatgagaatccaatcacttcctcttagttacagaccagtgaccgtccttgaaatccttaacaaatatggagacactctcctagaaaaa |
1986 |
T |
|
| Q |
469 |
gaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaa |
567 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||| |||||||||||| | |||||| |
|
|
| T |
1985 |
gaatcaactcgtgcctaaaagcttagagagattcagagcattacaactcaattacaaagtccaact-----attaaagtgatatgagagtggctcacaaa |
1891 |
T |
|
| Q |
568 |
taacaaagacagactgaaaccctagatgactcttttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaat |
667 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||| | |||||||||| |||| | |||||||||||||| ||| |||| |
|
|
| T |
1890 |
taacaaagacagactaaaactctagatgactcttttacaattgtggcttcagtgagt-tttaggtcttcagtctttgtttatatagcctgagtgtagaat |
1792 |
T |
|
| Q |
668 |
aggcgtgatgc |
678 |
Q |
| |
|
||||||||||| |
|
|
| T |
1791 |
aggcgtgatgc |
1781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 123 - 678
Target Start/End: Original strand, 18453 - 19013
Alignment:
| Q |
123 |
atgtctcgcaagaagtcagaacatcgtgacaaca--aatcacaaataaccaatataattgaaggacaaaaagtaaataactcaggttatttgctgaccca |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||| | | |||||||||||||||||||||||| ||||||| |
|
|
| T |
18453 |
atgtctcgcacgaagtcagaacatcgtgacaacagtaatcacagataaccaatataattaaag-atagaaagtaaataactcaggttatttgttgaccca |
18551 |
T |
|
| Q |
221 |
gttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcacaagct |
320 |
Q |
| |
|
||||||||||| ||||||||| | ||||| |||||||| || || |||||||||||||||||||||||||||||||||| |||||| ||||| | | |
|
|
| T |
18552 |
gttcggtgcaacttcacctacttttgggg-ctaccaagccatgaaggaaatccactatagtagtatcaattcgaagcatacataaaatctttcaccaacc |
18650 |
T |
|
| Q |
321 |
cactaacttctcacttaatcactacccgtggtatttctacctaagactcc--tagtcctaaatatgagaacccactcacttcctcttagtcacaaaccag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
18651 |
tactaacttctcacttaatcactacccgtggtatttctacctacgactctcatagtcctaaatatgagaacccactcacttcctcttaatcacataccag |
18750 |
T |
|
| Q |
419 |
tgacaatccttgaaatccttaacaaatatggagacactctcctag--aaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaact |
515 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
18751 |
tgaccgtccttgaaatccttagtaaatatggagacactctcctagaaaaaaaaaatcaactcgtgcttaaaagcttagagagattcagagcattacaact |
18850 |
T |
|
| Q |
516 |
caattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgactcttttgcaattgtagct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||||| ||| |||||||||||||| ||||| |||||| | | |
|
|
| T |
18851 |
caattacaaagtccaactctaatatcaaagtgatatgatcatggctcacaaataacaaagacaaactaaaaccctagatgaccctttttcaattgcggat |
18950 |
T |
|
| Q |
616 |
tcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgc |
678 |
Q |
| |
|
||| ||| ||||||||||||| |||| | |||||||||| |||||| ||||||| ||||||| |
|
|
| T |
18951 |
tcaatgagtaattaggtcttccgtctttgtttatatagcttgaatgcagaataggtgtgatgc |
19013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 93 - 677
Target Start/End: Complemental strand, 20962350 - 20961758
Alignment:
| Q |
93 |
aattatgtacacaatgttatgactagtcggatgtctcgcaagaagtcagaacatcgtgacaaca--aatcacaaata--accaatataattgaaggacaa |
188 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||| ||||||| ||| | |||||||||| ||||| || |
|
|
| T |
20962350 |
aattatgtacacaatgttatgaccagtcatatgtctcgtaagaactcagaacatcgtgacaacagtaatcacatatataatcaatataattaaaggataa |
20962251 |
T |
|
| Q |
189 |
aaagtaaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatca |
288 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||| | ||||||| ||||||||||| |||||| ||||||| ||| || |||| ||||||||||||||||| |
|
|
| T |
20962250 |
aaagagaataactcagattatttgttgacccactctggtgcaacttcacctacatctgggggttaccaagtcaggaaggaaagccactatagtagtatca |
20962151 |
T |
|
| Q |
289 |
attcgaagcatatataaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc---ctagtcctaaatatga |
385 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
20962150 |
attcgaagcatacataaaagttttcaccagcctgctaacttctcacttaatcactacccgtggtatttctacctaagactctcacaagtcctaaatatga |
20962051 |
T |
|
| Q |
386 |
gaacccactcacttcctcttagtcacaaaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgctta |
485 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||| ||| ||||||||| |||||| || |||||| |
|
|
| T |
20962050 |
gaacccactcacttcctcttagtcacagaccagtggccgtccttgaaatccttattaaatatggagacattctgctagaaaaataatcaactcatgctta |
20961951 |
T |
|
| Q |
486 |
aaagcttagaga-attcaaagcattacaactcaattac-aaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactg |
583 |
Q |
| |
|
|||||||| ||| ||||| || |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
20961950 |
aaagcttaaagagattcagagtattacaactcaattacaaaagtccaactctaaaatcaaagagatataagagtgtctcacaaataacaacgacagacta |
20961851 |
T |
|
| Q |
584 |
aaaccctagatgactcttttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatg |
677 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||| |||||||||| |||||| | |||||||||||||||||| ||||||| |||||| |
|
|
| T |
20961850 |
aaaccctagatggctctttt-caattgcggcttcagtagtgaattaggtctcctgtctttgtttatatagcctgaatgtagaataggtgtgatg |
20961758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 64 - 659
Target Start/End: Complemental strand, 20976303 - 20975705
Alignment:
| Q |
64 |
ttgaaatttcggcacgtagtataataacgaattatgtacacaatgttatgactagtcggatgtctc--gcaagaagtcagaacatcgtgacaaca--aat |
159 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||| | ||| |
|
|
| T |
20976303 |
ttgaaatttcggcacgtagta--ataacaagttatgtacacaatgttatgaccagtgagatgtctctcgcaagaagtcaaaacatcgtgacaatagtaat |
20976206 |
T |
|
| Q |
160 |
cacaaataaccaatataattgaaggacaaaaagtaaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaagg |
259 |
Q |
| |
|
||||||||| |||||||||| |||| ||| | ||||||||||| |||||| |||| |||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
20976205 |
cacaaataatcaatataattaaagggtaaaga--aaataactcagaatatttgttgacatagttcggtgcaacttcacctacatctgggggctaccaaac |
20976108 |
T |
|
| Q |
260 |
cagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttcta |
359 |
Q |
| |
|
||| || ||||||||||| | ||||||||||| ||||||| ||||||| ||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20976107 |
caggaaggaaatccactacaatagtatcaatttaaagcatacataaaagctttcaccaacctactaacttctcacttaatcactacccgtggtatttcta |
20976008 |
T |
|
| Q |
360 |
cctaagactc---ctagtcctaaatatgagaacccactcacttcctcttagtcacaaaccagtgacaatccttgaaatccttaacaaatatggagacact |
456 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
20976007 |
cctaagactctcactagtccaaaatatgagaacccactcacttcctcttagtcacagaccaatgaccgtccttgaaatccttatcaaatatagagacact |
20975908 |
T |
|
| Q |
457 |
ctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaactcaattac-aaagtccaactctaatatcaaagagatatgag |
554 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| | ||| | || |||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
20975907 |
ctcctagaaaaagaatcaacttgtgcttaaaagcttagatagatttagagtattacaactcaattacaaaagtccaactctaatatcaaagagatataag |
20975808 |
T |
|
| Q |
555 |
agtgtcacacaaataacaaagacagactgaaaccctagatgactcttttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagc |
654 |
Q |
| |
|
|||| | |||||||||||| |||| ||| ||||||||||||| ||||| |||||| ||||| | ||||||||||||||||| | |||||||||| |
|
|
| T |
20975807 |
agtggctcacaaataacaacgacaaactaaaaccctagatga--ctttttcaattgcgtcttcaatagtgaattaggtcttctgtctttgtttatatagc |
20975710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 216 - 604
Target Start/End: Complemental strand, 8147702 - 8147307
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtct-tca |
314 |
Q |
| |
|
||||| |||||||||| ||||||| || | |||||||||||| ||| || ||||| ||||||| || ||||||||||||||||| | |||| || ||| |
|
|
| T |
8147702 |
acccaattcggtgcaacttcacctttatctaggggctaccaagccaggaaggaaattcactataataatatcaattcgaagcatacaaaaaaaactatca |
8147603 |
T |
|
| Q |
315 |
caagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc--ctagtcctaaatatgagaa----cccactcacttcctcttagt |
408 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| ||| | |||||||||||| | |
|
|
| T |
8147602 |
ccagcctactaacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcctagatatgagagatccccctcccacttcctcttaat |
8147503 |
T |
|
| Q |
409 |
cacaaaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagca |
507 |
Q |
| |
|
||||| |||||| |||||||||| || ||||||||||||||||||||||| | |||||||||| |||| |||| ||||||||||| ||||| || |
|
|
| T |
8147502 |
cacaactcagtgatcgtccttgaaatact-aacaaatatggagacactctcctgaacaaagaatcaactcgttcttacaagcttagagagattcagagtt |
8147404 |
T |
|
| Q |
508 |
ttacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgactcttttg |
604 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| ||||| | ||||||||| ||||||| ||| ||||| || | |||||||||| |
|
|
| T |
8147403 |
ttacaactcgattacaaagtccaactctaatatcaaagtgatataagagtagctcacaaataataaagacaaactaaaaccttaaaagactcttttg |
8147307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 216 - 539
Target Start/End: Original strand, 15962270 - 15962592
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcac |
315 |
Q |
| |
|
||||| ||||||||||| |||||||||| | || |||||||| || || ||||| ||||||||||||||||||| |||||||| |||||| | || |
|
|
| T |
15962270 |
acccacttcggtgcaatgtcacctacatctaagg-ctaccaagctaggaaggaaattcactatagtagtatcaatttgaagcatacataaaaaccctc-- |
15962366 |
T |
|
| Q |
316 |
aagctc-actaacttctcacttaatcactacccgtggtatttctacctaaga--ctcctagtcctaaatatgagaaccc--actcacttcctcttagtca |
410 |
Q |
| |
|
| || |||| |||||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||| ||| |
|
|
| T |
15962367 |
--ggtctactac--tctcacttaatcactacctgtgtaatttctacctaagactctcctagtcctagatatgagatcccttactcacttcctcttaatca |
15962462 |
T |
|
| Q |
411 |
caa-accagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcat |
508 |
Q |
| |
|
||| ||||||| | | | ||| ||| | ||||||||||||||||| | ||||||||| | ||||||| |||||| |||| ||||| || | |
|
|
| T |
15962463 |
caatcccagtgatcgttc-taaaagtaacaactgaaatggagacactctcctaaactaagaatcaacttgtgcttacaagcttcgagagattcagagttt |
15962561 |
T |
|
| Q |
509 |
tacaactcaattacaaagtccaactctaata |
539 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
15962562 |
tacaactcaactacaaagtccaactctaata |
15962592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 469 - 658
Target Start/End: Complemental strand, 23432998 - 23432804
Alignment:
| Q |
469 |
gaatcaaatcgtgcttaaaagcttagag--aattcaaagcattacaactcaattacaaagtccaactctaat--atcaaagagatatgagagtgtcacac |
564 |
Q |
| |
|
||||||| ||||||||| |||||| ||| | ||| ||| |||||||||||| ||||||||||| ||| ||| ||||| ||||| |||||| | ||| |
|
|
| T |
23432998 |
gaatcaactcgtgcttacaagctttgagtgatttctaagaattacaactcaactacaaagtccagctc-aatgcatcaacatgatataagagtgactcac |
23432900 |
T |
|
| Q |
565 |
aaataacaaaga-cagactgaaaccctagatgactcttttgcaattgtag-cttcagtgaataattaggtcttctgtctctatttatatagcctga |
658 |
Q |
| |
|
|| ||||||||| |||||| |||||||| ||||||||||| ||| || | |||||||||| ||||||||||| |||| | |||||||||||||| |
|
|
| T |
23432899 |
aattaacaaagaacagactaaaaccctaaatgactcttttacaaatgacggcttcagtgaacaattaggtcttgagtctttctttatatagcctga |
23432804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 8532680 - 8532750
Alignment:
| Q |
330 |
ctcacttaatcactacccgtggtatttctacctaagactcctagtcctaaatatgagaacccactcacttcctct |
404 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
8532680 |
ctcacttaatcactatccgtggtatttctatctaagactc----tcctaagtatgagacccctctcacttcctct |
8532750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 8531365 - 8531465
Alignment:
| Q |
190 |
aagtaaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaa |
289 |
Q |
| |
|
||||||||||| ||| |||||| | |||||||||||||||| |||||||| | ||| ||| ||||| |||||| ||||||||||||| |||||| || |
|
|
| T |
8531365 |
aagtaaataacacag--tatttgttaacccagttcggtgcaacgtcacctacctctggtggcatccaagccagaaaggaaatccactataatagtattaa |
8531462 |
T |
|
| Q |
290 |
ttc |
292 |
Q |
| |
|
||| |
|
|
| T |
8531463 |
ttc |
8531465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 10189360 - 10189269
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaa |
307 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||| || || ||||| |||||| || ||| |||| |||||||| |||||| |
|
|
| T |
10189360 |
acccagttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaagcatacataaaa |
10189269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 42245123 - 42245188
Alignment:
| Q |
322 |
actaacttctcacttaatcactacccgtggtatttctacctaaga--ctcctagtcctaaatatga |
385 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||||| || |||||||||||| |||||| |
|
|
| T |
42245123 |
actatcttctcacttaatcactaccagtgtaatttctacctacgactctcctagtcctagatatga |
42245188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 9031542 - 9031482
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||| ||| || ||||||||||| |
|
|
| T |
9031542 |
acccagttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta |
9031482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 10082635 - 10082578
Alignment:
| Q |
14 |
ttccctagatctcactcagaaacagaacagagtgtctgctttgataccaattgaaatt |
71 |
Q |
| |
|
|||||| || ||||| ||||||||||| || ||||||||| |||| |||||||||||| |
|
|
| T |
10082635 |
ttccctggagctcacccagaaacagaatagggtgtctgctctgatgccaattgaaatt |
10082578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 10189560 - 10189503
Alignment:
| Q |
14 |
ttccctagatctcactcagaaacagaacagagtgtctgctttgataccaattgaaatt |
71 |
Q |
| |
|
|||||| || ||||| ||||||||||| || ||||||||| |||| |||||||||||| |
|
|
| T |
10189560 |
ttccctggagctcacccagaaacagaatagggtgtctgctctgatgccaattgaaatt |
10189503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 93 - 680
Target Start/End: Original strand, 13268719 - 13269311
Alignment:
| Q |
93 |
aattatgtacacaatgttatgactagtcggatgtctcgcaagaagtcagaacatcgtgacaaca--aatcacaaataaccaatataattgaaggacaaaa |
190 |
Q |
| |
|
||||| |||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||| ||||| | |||||| |||||||| || |
|
|
| T |
13268719 |
aattaagtacacgatgttatgatcagtcagatgtctcgcaagaagtcagaacatcttgacaacagtaatcacagataacaagtataat-gaaggacagaa |
13268817 |
T |
|
| Q |
191 |
agtaaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaat |
290 |
Q |
| |
|
|||||||| | |||||| |||| | |||||||||||||||| ||||||||||| |||||||||||||| ||| || ||||||||||| |||||||||||| |
|
|
| T |
13268818 |
agtaaatagcacaggttgtttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccactacagtagtatcaat |
13268917 |
T |
|
| Q |
291 |
tcgaagcatatataaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc---ctagtcctaaatatgaga |
387 |
Q |
| |
|
| |||||||| ||||||| |||||| | |||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
13268918 |
ttgaagcatacataaaagccttcaccgacctactaacttctcacttaatcattacccgtggtatttctaactaagaatctaactagtcctaaatatgaga |
13269017 |
T |
|
| Q |
388 |
acccactcacttcctcttagtcacaaaccagtgacaatccttgaaatc-cttaacaaat-atggagacactctcctagaaaaagaatcaaatcgtgctta |
485 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||| | ||| ||||| ||| ||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
13269018 |
acccactcacttcctattagtcacagacgcgtgaccgttcttaaaatcttttagcaaatgatggagacactctcctagaaaaagaatc-actcgtgctta |
13269116 |
T |
|
| Q |
486 |
aaagcttagaga-attcaaagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactga |
584 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||||| ||||| |||||||||| ||||| |||||| | ||||||||||| |||||||| | |
|
|
| T |
13269117 |
aaagcttagagagattcagagtattacaactcaattacaaagtcgaactcaaatatcaaagtgatataagagtggcttacaaataacaatgacagactaa |
13269216 |
T |
|
| Q |
585 |
aaccctagatgactcttttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgcac |
680 |
Q |
| |
|
||||| ||||||||||||| |||||| |||||||||| ||||||||||||| ||| | |||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
13269217 |
aaccccagatgactctttt-caattgcggcttcagtgatgaattaggtcttctctctttgtttatatagccttgatgcagaataggtgtgatgcac |
13269311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 674 - 810
Target Start/End: Original strand, 55456369 - 55456505
Alignment:
| Q |
674 |
gatgcacctgggaaggggttgtgtgaacagagaagccattaattatgtgtttataactgtggagtttattgtaacttccattctccaaagtgctttgtag |
773 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55456369 |
gatgaacctgggaaggggttgtgtgaacagagaagccattaattatgtgtttataactgtggagtttattataacttccattctccaaagtgctttgtag |
55456468 |
T |
|
| Q |
774 |
aagcgtatcatgagacgccaataagtatttttcatgt |
810 |
Q |
| |
|
|||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
55456469 |
aagcatgtcatgagacgctaataagtatttttcatgt |
55456505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 17871667 - 17871575
Alignment:
| Q |
214 |
tgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaa |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||| ||| || ||||| ||||| |||||||||||||| ||| ||| |||||| |
|
|
| T |
17871667 |
tgacccagttcggtgcaacttcacctacatctgagggctaccaagtcaggaaggaaattcacta-agtagtatcaattcaaagtatacataaaa |
17871575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 13875975 - 13876061
Alignment:
| Q |
220 |
agttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaa |
307 |
Q |
| |
|
|||| ||||||| || |||||||||||||| |||||||| ||| || ||||| |||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
13875975 |
agtttggtgcaacttaacctacatatgggg-ctaccaagccaggaaggaaattcactatagtagtatcaattcaaagaatacataaaa |
13876061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 13959088 - 13959178
Alignment:
| Q |
327 |
cttctcacttaatcactacccgtggtatttctacctaagact---cctagtcctaaatatgagaac--ccactcacttcctcttagtcaca |
412 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| |||||||||| ||| |||||| || | |||||||||||| ||||| |
|
|
| T |
13959088 |
cttctcacttaatcactacccatgcaatttctacctaagactctccctagtcctagatacgagaacctccgcccacttcctcttaatcaca |
13959178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 11289394 - 11289343
Alignment:
| Q |
322 |
actaacttctcacttaatcactacccgtggtatttctacctaagactcctag |
373 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
11289394 |
actagcttctcacttaatcactacccatgtaatttctatctaagactcctag |
11289343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 25354797 - 25354737
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||| ||| || ||||||||||| |
|
|
| T |
25354797 |
acccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta |
25354737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 173 - 678
Target Start/End: Original strand, 50057475 - 50057985
Alignment:
| Q |
173 |
tataattgaaggacaaaaagtaaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatc |
272 |
Q |
| |
|
||||| ||||||||| || |||||| || | ||||| | ||||||||||| |||||| ||||||||||| |||||||||||||| ||| || |||||| |
|
|
| T |
50057475 |
tataaatgaaggacagaaggtaaatgacaccaattattcgttgacccagttcagtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatc |
50057574 |
T |
|
| Q |
273 |
cactatagtagtatcaattcgaagcatatataaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc--- |
369 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||| | | |||||||||||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
50057575 |
cactatagtaatatcaattcgaagcatacataaaagctttcaccaacctactaacttctcacttaatcactgtccgtggaatttttacctaagactctca |
50057674 |
T |
|
| Q |
370 |
ctagtcctaaatatgagaacccactcacttcctcttagtcacaaaccagtgacaatccttgaaatccttaacaaat-atggagacactctcctagaaaaa |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||| || |||||| |
|
|
| T |
50057675 |
ctagtcctaaatatgagaacccactcacttcctcttagtcacagaccagtgaccgtccttgaaatccttaacaaataatggatacactct-cttgaaaaa |
50057773 |
T |
|
| Q |
469 |
gaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaa |
567 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
50057774 |
gattcaactcgtgcttaaaagcttagagagattcagagcattaaaactcaaatacaaagtccaactctaatatcaaagtgatatgagagtggctcacaaa |
50057873 |
T |
|
| Q |
568 |
taacaaagacagactgaaaccctagatgactct-tttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaa |
666 |
Q |
| |
|
||||||||||| ||| ||| ||||||||| ||| ||| |||||| |||||| ||| | ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
50057874 |
taacaaagacatactaaaatcctagatgaatctattttcaattgcggcttcaatgagtttttaggtcttctgtctctgtttatatagcctgaatgcagaa |
50057973 |
T |
|
| Q |
667 |
taggcgtgatgc |
678 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
50057974 |
taggtgtgatgc |
50057985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 220 - 678
Target Start/End: Complemental strand, 951787 - 951328
Alignment:
| Q |
220 |
agttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcacaagc |
319 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||| ||| || ||| |
|
|
| T |
951787 |
agttctgtgcaacttcacctacatatgggggctaccaatccagaaagaaaatccactatagcagtataaattcgaagcatacataaaagccttgaccagc |
951688 |
T |
|
| Q |
320 |
tcactaacttctcacttaatcactacccgtggtatttctacctaagactcc---tagtcctaaatatgagaacccactcacttcctcttagtcacaaacc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||| | ||||| |
|
|
| T |
951687 |
ctactaacttctcacttaatcactacccgtggtatttctacctaagactctaattaatcctaaatatgagagcccattcacttcctcttagttaaaaacc |
951588 |
T |
|
| Q |
417 |
agtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaact |
515 |
Q |
| |
|
|||||| | ||| |||| ||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||| || || || ||||||||| |
|
|
| T |
951587 |
agtgac---cgttgcaatc-ttaacaaatatggagacactctcctagaacatgaatcttcttgtgcttaaaagcttagagatatacagagtattacaact |
951492 |
T |
|
| Q |
516 |
caattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgactctttt-gcaattgtagc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| ||||| || |
|
|
| T |
951491 |
caattacaaagtccaactctaatatcaaagtgatatgagagtgactcacaaataaaaaagacagactaaaaccctagatgactcttttctaaattgcggc |
951392 |
T |
|
| Q |
615 |
ttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgc |
678 |
Q |
| |
|
|||||||| | ||| |||||| |||| | |||||||||||||||| ||||||| ||||||| |
|
|
| T |
951391 |
ttcagtgagtttttaagtcttcagtctttgtttatatagcctgaattcagaataggtgtgatgc |
951328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 207 - 369
Target Start/End: Complemental strand, 19748761 - 19748600
Alignment:
| Q |
207 |
tatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaa |
306 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||| || || || |||||| | || |||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
19748761 |
tatttgttgacctagttcggtgcaacttcacctatatttgcgg-ctaccatgctaggaatgaaattcactataatagtatcaattcgaagcatacataaa |
19748663 |
T |
|
| Q |
307 |
agtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc |
369 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
19748662 |
agctttcaccagcctactaacttctcacttaatcactagccgtgcaatttctacctaagactc |
19748600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 220 - 369
Target Start/End: Complemental strand, 23600572 - 23600423
Alignment:
| Q |
220 |
agttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcacaagc |
319 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||| || | || |
|
|
| T |
23600572 |
agttcggtgcaacttcacctacatctggaggctaccaaggcaagaagaaaattcactatagtagtatcaattcgaagcatgcataaaagctatctctagt |
23600473 |
T |
|
| Q |
320 |
tcactaacttctcacttaatcactacccgtggtatttctacctaagactc |
369 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
23600472 |
ccactagcttctcacttaatcactatttgtgcaatttctatctaagactc |
23600423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 49086753 - 49086677
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattc |
292 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| ||| || ||||| |||||||||||||||||||| |
|
|
| T |
49086753 |
acccagttcggtgcaacgtcacctacatgtgggggctaccaagccaggaaagaaattcactatagtagtatcaattc |
49086677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 51110456 - 51110548
Alignment:
| Q |
325 |
aacttctcacttaatcactacccgtggtatttctacctaagact---cctagtcctaaatatgagaacc--cactcacttcctcttagtcaca |
412 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| ||| |||||||||| ||||||||||| | | |||||||||||| ||||| |
|
|
| T |
51110456 |
aacttctcacttaatcactacctgtgcaatttctacctaaaactctccctagtcctagatatgagaaccttcgcccacttcctcttaatcaca |
51110548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 49086524 - 49086478
Alignment:
| Q |
446 |
atggagacactctcctagaaaaagaatcaaatcgtgcttaaaagctt |
492 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
49086524 |
atggagacactctcctagacaaagaatcaactcttgcttaaaagctt |
49086478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 25123440 - 25123489
Alignment:
| Q |
320 |
tcactaacttctcacttaatcactacccgtggtatttctacctaagactc |
369 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25123440 |
tcactatcttctcacttaatcactaccattggtatttctatctaagactc |
25123489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 33062383 - 33062443
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||| |||||| ||||||||||| |
|
|
| T |
33062383 |
acccagttcggtgcaacgtcacctac-tctgggggctaccaagccagaaaggaaatccacta |
33062443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 21434055 - 21434097
Alignment:
| Q |
327 |
cttctcacttaatcactacccgtggtatttctacctaagactc |
369 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
21434055 |
cttctcacttaatcactacccgtgatatttctatataagactc |
21434097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 3e-84; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 14 - 653
Target Start/End: Complemental strand, 15003698 - 15003049
Alignment:
| Q |
14 |
ttccctagatctcactcagaaacagaacagagtgtctgctttgataccaattgaaatttcggcacgtagtataataacgaattatgtacacaatgttatg |
113 |
Q |
| |
|
|||||| || ||||| ||||||||||||| ||| |||||||||| ||||||| |||||||| |||||| ||| | || || |||| |||||||| |
|
|
| T |
15003698 |
ttccctggagctcacccagaaacagaacaaggtgactgctttgatgccaattgtaatttcgggacgtaggt--atagcagatgttgaacacgatgttatg |
15003601 |
T |
|
| Q |
114 |
actagtcggatgtctcgcaagaagtcagaacatcgtgacaacaa--atcacaaataaccaatataattgaaggacaaaaagtaaataactcaggttattt |
211 |
Q |
| |
|
|| | || ||||| || |||| ||||||||||| |||||||| | ||||||||| | | ||||| ||||||| ||||||| ||||| || |||| |
|
|
| T |
15003600 |
acaaatcaaatgtcgcgtaagatgtcagaacatcaggacaacaacaacaacaaataactattttaattaaaggacatgaagtaaaagactcaagtaattt |
15003501 |
T |
|
| Q |
212 |
gctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtct |
311 |
Q |
| |
|
|| ||||||||||||||| || || ||||| ||||| |||| ||| ||| |||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15003500 |
attgtcccagttcggtgcaactttacgtacatctggggactactaagccaggaatgaaatttactatagtagtatcaattcgaagcatacataaaagcta |
15003401 |
T |
|
| Q |
312 |
tcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc---ctagtcctaaatatgagaac----ccactcacttcctct |
404 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||| || | |||||||||| |
|
|
| T |
15003400 |
tcaccagtctactaatttctcacttaatcactacccgtgcaacttctacctaagactctcactagtcctagatatgagagattttcctcccacttcctct |
15003301 |
T |
|
| Q |
405 |
tagtcacaaa-ccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attca |
502 |
Q |
| |
|
|||||||| | |||||||| | ||| || | || | |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
15003300 |
tagtcacagatccagtgaccgttcttcaagtactaacaaaatatggagacactctcctagaaaatgaatcaactcgtgcttaaaagctttgagagattca |
15003201 |
T |
|
| Q |
503 |
aagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgac-tctt |
601 |
Q |
| |
|
|| |||| ||||||| ||||||||||||||||||||||||| ||||||||| || | |||||||||||| |||||||| |||||||| | ||| |||| |
|
|
| T |
15003200 |
gagttttactactcaataacaaagtccaactctaatatcaaagtgatatgagaatgactcacaaataacaatgacagactaaaaccctaaaagacttctt |
15003101 |
T |
|
| Q |
602 |
ttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatag |
653 |
Q |
| |
|
|| |||||| ||||||||| |||||||||| ||| ||| | ||||||||| |
|
|
| T |
15003100 |
tttcaattgcggcttcagtgcttaattaggtcctctatctttgtttatatag |
15003049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 219 - 680
Target Start/End: Complemental strand, 10260288 - 10259821
Alignment:
| Q |
219 |
cagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcacaag |
318 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||| ||| || ||||| |||| |||||||||||||| |||||||| ||||||| ||||| || |
|
|
| T |
10260288 |
cagttcggtgcaacttcaccttcatctgggggctaccaaaccaggaaggaaattcactctagtagtatcaatttgaagcatacataaaagctttcaccag |
10260189 |
T |
|
| Q |
319 |
ctcactaacttctcacttaatcactacccgtggtatttctacctaagactc--ctagtcctaaatatgagaa--cccactc--acttcctcttagtcaca |
412 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||| ||| ||| ||||||||||| ||||| |
|
|
| T |
10260188 |
cctactaacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcatagatatgagagatccctctcccacttcctcttaatcaca |
10260089 |
T |
|
| Q |
413 |
aaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcattac |
511 |
Q |
| |
|
||||||||| ||||||||| || ||||| ||||||||||||||||| || ||||||||| ||||||||| ||||||||||| ||||| || |||| |
|
|
| T |
10260088 |
aaccagtgatcgcccttgaaatact-aacaa-tatggagacactctccttgacaaagaatcacctcgtgcttacaagcttagagagattcagagttttac |
10259991 |
T |
|
| Q |
512 |
aactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgactcttttg-caattg |
610 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| ||||| |||||| | |||||||||||||| |||||| |||||||| | |||||||||| ||||| |
|
|
| T |
10259990 |
aactcaattacaaattccaactataatatcaaagtgatataagagtggctcacaaataacaaaggcagactaaaaccctaaaagactcttttgtaaattg |
10259891 |
T |
|
| Q |
611 |
tagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgcac |
680 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||| || || ||||| ||| |||||||| |
|
|
| T |
10259890 |
cggcttcagtactcaatttggtcttctgtcttcctttatatagcatgcttgctgaatgggcttgatgcac |
10259821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 425 - 677
Target Start/End: Complemental strand, 30925857 - 30925606
Alignment:
| Q |
425 |
tccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaactcaattaca |
523 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
30925857 |
tccttgaaattcttaataaa-atggagacagtctccgagaaaaggaatcaactcgtgcttaaaagcttagagagattcaaagctttacaactcaattaca |
30925759 |
T |
|
| Q |
524 |
aagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgactcttttgcaattgtagcttcagtgaa |
623 |
Q |
| |
|
||||| ||||| |||||||||| ||||| |||||| | |||||||||||| |||||||| |||||||| |||||| |||| |||||| |||| ||||| |
|
|
| T |
30925758 |
aagtcgaactcaaatatcaaagtgatataagagtggctcacaaataacaacgacagactaaaaccctatatgact-tttttcaattgcggcttaagtgag |
30925660 |
T |
|
| Q |
624 |
taattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatg |
677 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| |||| ||||||| |||||| |
|
|
| T |
30925659 |
tttttaggtcttctgtctttatttatatagcctaaatgcagaataggtgtgatg |
30925606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 411
Target Start/End: Complemental strand, 21546963 - 21546767
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcac |
315 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||| |||||||||| || | ||||| ||||| |||||||||||||| ||||| | |||||| | | |
|
|
| T |
21546963 |
acccagttccgtgcaacttcacctacatctggaggctaccaagttagggaggaaattcactaaagtagtatcaattcaaagcaaacataaaaaccctt-- |
21546866 |
T |
|
| Q |
316 |
aagctc-actaacttctcacttaatcactacccgtggtatttctacctaaga--ctcctagtcctaaatatgagaac--ccactcacttcctcttagtca |
410 |
Q |
| |
|
| || |||| || |||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||| || |||||||||||||| ||| |
|
|
| T |
21546865 |
--ggtctactagtttgtcacttaatcactacccgtgcaatttctacctatgactctcctagtcctagatatgagaacctccgctcacttcctcttaatca |
21546768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 508 - 603
Target Start/End: Complemental strand, 9739488 - 9739392
Alignment:
| Q |
508 |
ttacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagact-gaaaccctagatgactctttt |
603 |
Q |
| |
|
||||||||||| || | |||||| ||||||||||||||||||| ||| ||| | |||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
9739488 |
ttacaactcaaataaatagtccagctctaatatcaaagagatacgagtgtggctcacaaataacaaggacagactaaaaaccctaattgactctttt |
9739392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 600 - 678
Target Start/End: Original strand, 18070197 - 18070273
Alignment:
| Q |
600 |
ttttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgc |
678 |
Q |
| |
|
|||| ||||||| |||| ||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
18070197 |
tttttcaattgtggctttagtgagtaattaggtctt--gtctctatttatatagcctgaatgcagaataggtgtgatgc |
18070273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 508 - 679
Target Start/End: Complemental strand, 9732613 - 9732440
Alignment:
| Q |
508 |
ttacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagact-gaaaccctagatgactctttt-gc |
605 |
Q |
| |
|
|||||||| || || | ||||||||||||||||||| |||||| ||||||| | |||||||||||| |||| ||| |||||||| |||||||||| |
|
|
| T |
9732613 |
ttacaactaaactaaatagtccaactctaatatcaatgagatacgagagtggctcacaaataacaaggacaaactaaaaaccctaattgactcttttctg |
9732514 |
T |
|
| Q |
606 |
aattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgca |
679 |
Q |
| |
|
||||| |||||||||| || || ||||| |||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
9732513 |
aattgcggcttcagtgacaaaataagtcttgagtcttcctttatatagcctgattgcagaataggcttgatgca |
9732440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 30226082 - 30226143
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| ||| || ||||||||||| |
|
|
| T |
30226082 |
acccagttcggtgcaacgtcacctacatctgggggctaccaagtcaggaaggaaatccacta |
30226143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 23175042 - 23174981
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||| ||| || ||||||||||| |
|
|
| T |
23175042 |
acccagttcggtgcaacatcacctacatctaggggctaccaagccaggaaggaaatccacta |
23174981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 24813922 - 24813983
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||||||| ||| || ||||||||||| |
|
|
| T |
24813922 |
acccagttcggtgcaacatgacctacataggggggctaccaagccaggaaggaaatccacta |
24813983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 42782753 - 42782813
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||||| ||| || |||||||||| |
|
|
| T |
42782753 |
acccagttcggtgcaatgtcacctac-tctgggggctaccaagccaggaagaaaatccacta |
42782813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 5e-80; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 203 - 680
Target Start/End: Original strand, 30947318 - 30947794
Alignment:
| Q |
203 |
aggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatata |
302 |
Q |
| |
|
|||||||||| ||||| |||| ||||||| ||||||||||| | |||||||||||| ||| || ||||| |||||| ||| ||||||||||||||||| | |
|
|
| T |
30947318 |
aggttatttgttgacctagtttggtgcaacttcacctacatctaggggctaccaagtcaggaaggaaattcactatggtaatatcaattcgaagcataca |
30947417 |
T |
|
| Q |
303 |
taaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc-ctagtcctaaatatgagaacccactc--actt |
399 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||| | |||| ||| ||| | || |
|
|
| T |
30947418 |
taaaagttttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaagactctctagtgtga-----gagatccccctccaagtt |
30947512 |
T |
|
| Q |
400 |
cctcttagtcacaaaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagcttagaga-a |
498 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| | || | |||||||||||||| | ||||||| |||||||||| ||||||||| ||||||||||| | |
|
|
| T |
30947513 |
cctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagaga |
30947611 |
T |
|
| Q |
499 |
ttcaaagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgact |
598 |
Q |
| |
|
|||| || ||||||||| |||||||||||||||||| ||||||||| ||||| |||||| | ||||||||||||||||| ||| |||||||| | |||| |
|
|
| T |
30947612 |
ttcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagact |
30947711 |
T |
|
| Q |
599 |
ctttt-gcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgcac |
680 |
Q |
| |
|
||||| |||||| ||||||||| |||||||| || |||| ||||||||||||| |||||||| || |||||||| |
|
|
| T |
30947712 |
cttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgagcttgatgcac |
30947794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 17363504 - 17363590
Alignment:
| Q |
206 |
ttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattc |
292 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| |||||| ||||||| ||| |||||||| |||||| |||||||||||| |
|
|
| T |
17363504 |
ttatttgttgacccagttcggtgcaacctcacctacatctgggggttaccaagtcaggaatgaaattcactatgatagtatcaattc |
17363590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 414
Target Start/End: Complemental strand, 20378389 - 20378189
Alignment:
| Q |
214 |
tgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttc |
313 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||| ||||||||| ||| || |||| ||||| |||||||||||||| |||| || ||| || | || |
|
|
| T |
20378389 |
tgacccggttcggtgcaacttcacctacatctgggagctaccaagccaggaagaaaatgcacta-agtagtatcaattcaaagcgtacatacaaaccctc |
20378291 |
T |
|
| Q |
314 |
acaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc---ctagtcctaaatatgagaac--ccactcacttcctcttagt |
408 |
Q |
| |
|
| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| || | |||||||||||| | |
|
|
| T |
20378290 |
----gatttacagcttctcacttaatcactacccgtgcaatttctacctaagactctctctagtcctagatatgagaacctccgcccacttcctcttaat |
20378195 |
T |
|
| Q |
409 |
cacaaa |
414 |
Q |
| |
|
|||||| |
|
|
| T |
20378194 |
cacaaa |
20378189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 31067677 - 31067577
Alignment:
| Q |
186 |
caaaaagtaaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagta |
285 |
Q |
| |
|
|||||||||||| || || |||||||| | ||| |||| ||||||| |||||||| | ||||||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
31067677 |
caaaaagtaaatgacacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactataatagta |
31067578 |
T |
|
| Q |
286 |
t |
286 |
Q |
| |
|
| |
|
|
| T |
31067577 |
t |
31067577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 553 - 658
Target Start/End: Complemental strand, 20378047 - 20377940
Alignment:
| Q |
553 |
agagtgtcacacaaataacaaaga-cagactgaaaccctagatgactcttttgcaattgtag-cttcagtgaataattaggtcttctgtctctatttata |
650 |
Q |
| |
|
|||||| | ||||||||||||||| || ||| |||| ||| ||| ||||||||||| || | |||||||||||||||||||||| |||| | |||||| |
|
|
| T |
20378047 |
agagtgactcacaaataacaaagaacaaactaaaacactaaatgtctcttttgcaaatgacggcttcagtgaataattaggtcttgagtctttctttata |
20377948 |
T |
|
| Q |
651 |
tagcctga |
658 |
Q |
| |
|
|||||||| |
|
|
| T |
20377947 |
tagcctga |
20377940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 8163146 - 8163045
Alignment:
| Q |
205 |
gttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatata |
304 |
Q |
| |
|
|||||||| | || ||||||| |||||| |||| ||| | | |||||||||||| ||| || |||||||||||| ||||||| || ||||||| |||| |
|
|
| T |
8163146 |
gttatttgttaacacagttcgatgcaatgtcacgtacgtcttggggctaccaagtcaggaagaaaatccactataacagtatcagtttgaagcatgtata |
8163047 |
T |
|
| Q |
305 |
aa |
306 |
Q |
| |
|
|| |
|
|
| T |
8163046 |
aa |
8163045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 17395542 - 17395623
Alignment:
| Q |
205 |
gttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtat |
286 |
Q |
| |
|
|||||||| | |||||||||||||||| || |||| | ||||||||| |||| ||| || ||||||||||||| |||||| |
|
|
| T |
17395542 |
gttatttgtttacccagttcggtgcaacgtcgcctaagtgtgggggctatcaagccaggaaggaaatccactataatagtat |
17395623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 18765673 - 18765733
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||| ||| || ||||||||||| |
|
|
| T |
18765673 |
acccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta |
18765733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 273 - 654
Target Start/End: Complemental strand, 17099744 - 17099350
Alignment:
| Q |
273 |
cactatagtagtatcaattcgaagcatatataaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc--- |
369 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||| |||| ||| || |||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
17099744 |
cactgtagtagtatcaattcgaagtatacataaaagctatcaccagcctacgaacttctcacttaatcaccacccgtgcaatttctacctaagactctca |
17099645 |
T |
|
| Q |
370 |
ctagtcctaaatatgagaa---ccca-ctcacttcctcttagtcacaaa-ccagtgacaatccttgaaat--ccttaacaaa--tatggagacactctcc |
460 |
Q |
| |
|
||||| ||| |||||||| |||| | | |||||||||||||||| | |||||||| ||||| || | | | |||||| |||||||||||||||| |
|
|
| T |
17099644 |
ctagttctagatatgagagatccccatcccgcttcctcttagtcacagatccagtgaccgtccttaaagtaacttgaacaaaaatatggagacactctcc |
17099545 |
T |
|
| Q |
461 |
tagaaaaagaatcaaatcgtgcttaaaagcttagaga-attcaaagcattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtgt |
559 |
Q |
| |
|
|||| || ||||||| |||||||||||||||| || | ||||| || |||||||||||| ||||||||||||||||||||||| | || || ||||| |
|
|
| T |
17099544 |
tagacaatgaatcaactcgtgcttaaaagctttgacagattcagagttttacaactcaataacaaagtccaactctaatatcaaggtgacataagagttg |
17099445 |
T |
|
| Q |
560 |
cacacaaataacaaagacagactgaaaccctagatgactcttttgcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagc |
654 |
Q |
| |
|
| |||||||||||| || ||||| || ||||| | ||| ||| |||||| ||||||||| |||||||||||||| || | |||||||||| |
|
|
| T |
17099444 |
ctcacaaataacaacgatagactaaagccctaaaaaacttcttttcaattgcggcttcagtgctcaattaggtcttctgcctttgtttatatagc |
17099350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 194 - 412
Target Start/End: Original strand, 15116767 - 15116985
Alignment:
| Q |
194 |
aaataactcaggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcg |
293 |
Q |
| |
|
||||||| || | |||||| ||||||||||| |||||| |||||||| | |||||||||||||| ||| || ||||| ||||| |||| ||||||||| |
|
|
| T |
15116767 |
aaataacacaaggtatttgttgacccagttcagtgcaacctcacctacgtctgggggctaccaagtcaggaaggaaattcacta-agtattatcaattca |
15116865 |
T |
|
| Q |
294 |
aagcatatataaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagact---cctagtcctaaatatgagaac- |
389 |
Q |
| |
|
|| |||| |||||| | || | || |||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
15116866 |
aatcatacataaaaaccctc----ggtctacaacttctcacttaatcaccacccgtgcaatttctacctaagactctccctagtcctagatatgagaacc |
15116961 |
T |
|
| Q |
390 |
-ccactcacttcctcttagtcaca |
412 |
Q |
| |
|
||| |||||||||||| ||||| |
|
|
| T |
15116962 |
tccatccacttcctcttaatcaca |
15116985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 292
Target Start/End: Original strand, 19663576 - 19663661
Alignment:
| Q |
207 |
tatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattc |
292 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||| ||||||| ||| || |||||||| |||||| |||||||||||| |
|
|
| T |
19663576 |
tatttgttgacccagttcggtgcaacctcacctacatatgcgggctacaaagccatgaatgaaattcactatgatagtatcaattc |
19663661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 492
Target Start/End: Original strand, 19663715 - 19663884
Alignment:
| Q |
327 |
cttctcacttaatcactacccgtggtatttctacctaagactc---ctagtcctaaatatgaga----acccactcacttcctcttagtcaca-aaccag |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||| ||| | |||||||||||||||| | | |||| |
|
|
| T |
19663715 |
cttctcacttaatcactacccgtgtaatttctacctaagactctcactattcctagatatgagagatccccctcccacttcctcttagtcatagatccag |
19663814 |
T |
|
| Q |
419 |
tgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagctt |
492 |
Q |
| |
|
|||| ||||| ||| ||||| | ||||||||||||||| ||||||||||| || || |||||| |||||| |
|
|
| T |
19663815 |
tgaccgtccttaaaa----taacataaatggagacactctccaagaaaaagaattaactcttgcttacaagctt |
19663884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 20845956 - 20845896
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||| ||| || ||||||||||| |
|
|
| T |
20845956 |
acccagttcggtgcaacgtcacctac-tatgggggctaccaagtcaggaaggaaatccacta |
20845896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 24394618 - 24394699
Alignment:
| Q |
205 |
gttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtat |
286 |
Q |
| |
|
|||||||| | ||||| |||||||||| |||||||||| ||||||| ||||| ||| || ||||||||||||| |||||| |
|
|
| T |
24394618 |
gttatttgttaacccatttcggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatccactataatagtat |
24394699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 11204719 - 11204779
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccacta |
277 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||| ||| || ||||||||||| |
|
|
| T |
11204719 |
acccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta |
11204779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 369
Target Start/End: Original strand, 24482315 - 24482468
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaagtcttcac |
315 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||| |||| || || ||||| ||||||||||||||||||||| |||||| |||||| ||| | |
|
|
| T |
24482315 |
acccagtttggtgcaacgtcacctacatctgggggctaacaagtcaagaaggaaattcactatagtagtatcaattcgcagcatacataaaaactttctc |
24482414 |
T |
|
| Q |
316 |
aagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc |
369 |
Q |
| |
|
|| |||| ||||||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
24482415 |
cagtctactagcttctcacttaatcactactcgtgcaatttctatctaagactc |
24482468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 16196223 - 16196138
Alignment:
| Q |
207 |
tatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattc |
292 |
Q |
| |
|
|||||| |||| ||||||| ||||| | |||||||| ||||||| ||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
16196223 |
tatttgttgacacagttcgatgcaacctaacctacatctgggggccaccaaggcatgaatgaaattcactatgatagtatcaattc |
16196138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 32179304 - 32179395
Alignment:
| Q |
216 |
acccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatatataaaa |
307 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||| |||||| ||| || || |||| |||||||| ||||| |||| |||||||| |||||| |
|
|
| T |
32179304 |
acccagttcggtgcaacttcacctacgtctggaggctacaaagttaggaagaaaattcactatagcagtattaatttgaagcatacataaaa |
32179395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 19708332 - 19708290
Alignment:
| Q |
317 |
agctcactaacttctcacttaatcactacccgtggtatttcta |
359 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
19708332 |
agctcactaccttctcacttaattacaacccgtggtatttcta |
19708290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 9967 - 10045
Alignment:
| Q |
214 |
tgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattc |
292 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||| ||| ||| || ||||| ||||||| |||||||||||| |
|
|
| T |
9967 |
tgacccagttcggtgcaacctaacctacatctgggggctacaaagccaggaaggaaattcactataatagtatcaattc |
10045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 492
Target Start/End: Original strand, 10099 - 10268
Alignment:
| Q |
327 |
cttctcacttaatcactacccgtggtatttctacctaagactc---ctagtcctaaatatgagaa----cccactcacttcctcttagtcacaaa-ccag |
418 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||||| ||||||||| |||||||| ||| |||||||||||||| ||||| | |||| |
|
|
| T |
10099 |
cttctcacttaatcactacctgtgtaatttctatctaagactctcactagtcctagatatgagagacccccctctcacttcctcttactcacagatccag |
10198 |
T |
|
| Q |
419 |
tgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaaatcgtgcttaaaagctt |
492 |
Q |
| |
|
||| |||||| || | || | | ||||||||||||||||||||||| |||||| || |||||| |||||| |
|
|
| T |
10199 |
tgatcatccttaaagt----aatagaaatggagacactctcctagaaaaaaaatcaactcttgcttacaagctt |
10268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 5887 - 5926
Alignment:
| Q |
330 |
ctcacttaatcactacccgtggtatttctacctaagactc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5887 |
ctcacttaatcactacccgtggtatttctatctaagactc |
5926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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