View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911-Insertion-4 (Length: 795)

Name: NF5911-Insertion-4
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911-Insertion-4
NF5911-Insertion-4
[»] chr8 (17 HSPs)
chr8 (12-381)||(1276900-1277273)
chr8 (455-665)||(1276621-1276836)
chr8 (74-184)||(1196265-1196375)
chr8 (62-174)||(1224283-1224395)
chr8 (740-792)||(1276494-1276546)
chr8 (544-667)||(1241795-1241918)
chr8 (64-183)||(1242517-1242636)
chr8 (544-667)||(1252508-1252631)
chr8 (64-183)||(1253216-1253335)
chr8 (740-792)||(37198269-37198321)
chr8 (740-792)||(27853641-27853693)
chr8 (740-792)||(44433712-44433764)
chr8 (537-608)||(1195797-1195868)
chr8 (621-667)||(1220171-1220217)
chr8 (740-790)||(23960555-23960605)
chr8 (740-790)||(40399467-40399517)
chr8 (740-789)||(37197880-37197929)
[»] chr5 (9 HSPs)
chr5 (740-792)||(16528683-16528735)
chr5 (740-795)||(16528864-16528919)
chr5 (740-795)||(16529040-16529095)
chr5 (740-789)||(35159786-35159835)
chr5 (740-792)||(19121990-19122042)
chr5 (740-792)||(31486806-31486858)
chr5 (740-792)||(43394924-43394976)
chr5 (742-792)||(26523130-26523180)
chr5 (740-789)||(13035173-13035222)
[»] chr3 (7 HSPs)
chr3 (740-792)||(46451553-46451605)
chr3 (740-792)||(3847900-3847952)
chr3 (740-792)||(11220859-11220911)
chr3 (740-792)||(20877187-20877239)
chr3 (740-792)||(47503024-47503076)
chr3 (740-792)||(47503197-47503249)
chr3 (740-795)||(11454288-11454343)
[»] chr2 (5 HSPs)
chr2 (740-792)||(10129468-10129520)
chr2 (740-792)||(28612204-28612256)
chr2 (740-792)||(28612417-28612469)
chr2 (742-789)||(28612842-28612889)
chr2 (740-790)||(3249772-3249822)
[»] scaffold0240 (1 HSPs)
scaffold0240 (740-792)||(13334-13386)
[»] chr7 (6 HSPs)
chr7 (740-792)||(12140831-12140883)
chr7 (740-792)||(16671688-16671740)
chr7 (740-792)||(17646056-17646108)
chr7 (740-792)||(22324367-22324419)
chr7 (740-792)||(23591384-23591436)
chr7 (740-792)||(9141930-9141983)
[»] chr6 (3 HSPs)
chr6 (740-792)||(9829002-9829054)
chr6 (740-792)||(23902590-23902642)
chr6 (743-792)||(25068048-25068097)
[»] chr4 (4 HSPs)
chr4 (740-792)||(2481622-2481674)
chr4 (740-792)||(52689589-52689641)
chr4 (740-795)||(48076451-48076506)
chr4 (740-792)||(8118464-8118517)
[»] chr1 (6 HSPs)
chr1 (740-792)||(318638-318690)
chr1 (740-792)||(44263172-44263224)
chr1 (740-795)||(12115388-12115443)
chr1 (740-792)||(3227193-3227246)
chr1 (740-789)||(5429135-5429184)
chr1 (740-789)||(45417574-45417623)
[»] scaffold0001 (1 HSPs)
scaffold0001 (740-795)||(196667-196722)
[»] scaffold0345 (1 HSPs)
scaffold0345 (740-790)||(9068-9118)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 1277273 - 1276900
Alignment:
Q  12 gttacatatgatatggttgcacattaatgttctataaaaattgtatg----taattcaggcattggttgcagtaagtgaagtgatgcaacaattgaatga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1277273 gttacatatgatatggttgcacattaatgttctataaaaattgtatgcatgtaattcaggcattggttgcagtaagtgaagtgatgcaacaattgaatga 1277174  T
Q  108 gaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgttgtcattaggatgtggaagaaacacgattctagggcctggttct 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1277173 gaagaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgttgtcattaggatgtggaagaaacacgattctagggcctggttct 1277074  T
Q  208 ttacttgcaaaatctttctcgtatagtaattggacgtccattcttgctttgggttatgctagtgctgctgcagacatacatgaatatcaccttgcatcag 307  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1277073 ttacttgcaaaaaccttctcgtataataattggacgtccattcttgctttgggttatgctagtgctgctgcagacatacatgaatatcaccttgcatcag 1276974  T
Q  308 tcttcccagactcactttcttcggaaaattactaccttcgagttgaggtacataataaatggttgcatataggg 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1276973 tcttcccagactcaccttcttcggaaaattactaccttcgagttgaggtacataataaatggttgcatataggg 1276900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 1276836 - 1276621
Alignment:
Q  455 cattgaatgaaacatgtaatgtccgggtatatgtgc-----aggagtataacttgaatccatctattgtcaatgtcaccgaagaaggcatgcaaaaactt 549  Q
    ||||||||||||||||||| ||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1276836 cattgaatgaaacatgtaacgtccgggtatatgtgctgtgcaggagtataacttgaatccatctattgtcaatgttaccgaagaaggcatgcaaaaactt 1276737  T
Q  550 gtaaaggcaggagaagacttgttgaaacaacctgttaagatacaaaatgttacttcttttgtcccatatgtaaaaccaagtgagggtacaaacgatgagg 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1276736 gtaaaggcaggagaagacttgttgaaacaacctgttaagatacaaaatgttacttcgtttgtcccatatgtaaaaccaagtgagggtacaaacgatgagg 1276637  T
Q  650 ctcttacaaggtttgt 665  Q
    ||||||||||||||||    
T  1276636 ctcttacaaggtttgt 1276621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 1196375 - 1196265
Alignment:
Q  74 ttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgttgtcattagg 173  Q
    ||||||| | ||||||||||||| ||||| | |||||||||  | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  1196375 ttgcagtgaatgaagtgatgcaagaattggaggagaaaaattatgatttcatacctgtgaatccaaacgaacctaccaaattcgtgttgttgtcattagg 1196276  T
Q  174 atgtggaagaa 184  Q
    |||||||||||    
T  1196275 atgtggaagaa 1196265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 1224395 - 1224283
Alignment:
Q  62 ttcaggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgtt 161  Q
    |||||||||||||||| || ||||||||||| ||| ||||||||||||| ||| | ||||||||||||||||   ||||| | || ||||||||||||||    
T  1224395 ttcaggcattggttgcggtgagtgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtgacggcaaacaagccaaccaaaatcgtgtt 1224296  T
Q  162 gttgtcattagga 174  Q
    ||||||| |||||    
T  1224295 gttgtcaatagga 1224283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 1276546 - 1276494
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1276546 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 1276494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 544 - 667
Target Start/End: Complemental strand, 1241918 - 1241795
Alignment:
Q  544 aaacttgtaaaggcaggagaagacttgttgaaacaacctgttaagatacaaaatgttacttcttttgtcccatatgtaaaaccaagtgagggtacaaacg 643  Q
    |||||||||||||||||||| ||||| ||| || || |||||||| |     |||||||||||||||||||||| | |||||||| |||||||||||| |    
T  1241918 aaacttgtaaaggcaggagaggacttattggaagaaactgttaaggtcatggatgttacttcttttgtcccatacgaaaaaccaactgagggtacaaatg 1241819  T
Q  644 atgaggctcttacaaggtttgtgc 667  Q
     | ||||||||  ||||| |||||    
T  1241818 ctcaggctcttgaaaggtctgtgc 1241795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 1242636 - 1242517
Alignment:
Q  64 caggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgt 163  Q
    ||||||||| ||||||| |||||||||||  ||| |||  | || || ||| || |||||||| ||||||||  |||  |||||||||||||| | ||||    
T  1242636 caggcattgcttgcagtgagtgaagtgataaaactattagaggaaaagaattctgatttcatttctgtgaatgaaaatcaacctaccaaaatcctcttgt 1242537  T
Q  164 tgtcattaggatgtggaaga 183  Q
    | ||||||||||||||||||    
T  1242536 tatcattaggatgtggaaga 1242517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 667
Target Start/End: Complemental strand, 1252631 - 1252508
Alignment:
Q  544 aaacttgtaaaggcaggagaagacttgttgaaacaacctgttaagatacaaaatgttacttcttttgtcccatatgtaaaaccaagtgagggtacaaacg 643  Q
    |||||||||||||||||||| |||||  || || || |||||||| |     |||||||||||||||||||||| | |||||||| |||||||||||| |    
T  1252631 aaacttgtaaaggcaggagatgacttactggaagaaactgttaaggtcatggatgttacttcttttgtcccatacgaaaaaccaactgagggtacaaatg 1252532  T
Q  644 atgaggctcttacaaggtttgtgc 667  Q
     | ||||||||  ||||| |||||    
T  1252531 ctcaggctcttgaaaggtctgtgc 1252508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 1253335 - 1253216
Alignment:
Q  64 caggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgt 163  Q
    ||||||||| ||||||| |||||||||||  ||| |||  | || || ||| || |||||||| ||||||||  |||  |||||||||||||| | ||||    
T  1253335 caggcattgcttgcagtgagtgaagtgataaaactattagaggaaaagaattctgatttcatttctgtgaatgaaaatcaacctaccaaaatcctcttgt 1253236  T
Q  164 tgtcattaggatgtggaaga 183  Q
    | ||||||||||||||||||    
T  1253235 tatcattaggatgtggaaga 1253216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 37198321 - 37198269
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||||||||||||||||||||||||||    
T  37198321 acctaacaaattccatctaaaaaaatgcattgcaccaatttcattcctatcct 37198269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 27853693 - 27853641
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  27853693 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 27853641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 44433712 - 44433764
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  44433712 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 44433764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 608
Target Start/End: Complemental strand, 1195868 - 1195797
Alignment:
Q  537 catgcaaaaacttgtaaaggcaggagaagacttgttgaaacaacctgttaagatacaaaatgttacttcttt 608  Q
    |||| |||||||| ||||||||||||| ||||||||| ||||||  |||||||| |  ||||| ||||||||    
T  1195868 catggaaaaacttataaaggcaggagaggacttgttggaacaacgagttaagattctgaatgtaacttcttt 1195797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Complemental strand, 1220217 - 1220171
Alignment:
Q  621 aaaaccaagtgagggtacaaacgatgaggctcttacaaggtttgtgc 667  Q
    ||||||||||||||||||||| | ||||||||||  |||||||||||    
T  1220217 aaaaccaagtgagggtacaaatgctgaggctcttgaaaggtttgtgc 1220171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 790
Target Start/End: Complemental strand, 23960605 - 23960555
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatc 790  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||    
T  23960605 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatc 23960555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 790
Target Start/End: Complemental strand, 40399517 - 40399467
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatc 790  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||    
T  40399517 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatc 40399467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 789
Target Start/End: Complemental strand, 37197929 - 37197880
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctat 789  Q
    ||||||||||||  |||||||| ||| ||| |||||||||||||||||||    
T  37197929 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctat 37197880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 16528683 - 16528735
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    |||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||    
T  16528683 acctaacaaattctatctaaaaaaatgcatcgcaccaatttcattcctatcct 16528735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 16528864 - 16528919
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcctttt 795  Q
    ||||||||| ||  |||||||| ||||||| |||||||||||||||||||||||||    
T  16528864 acctaacaacttccatctaaaaaaattcatcgcaccaatttcattcctatcctttt 16528919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 16529040 - 16529095
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcctttt 795  Q
    ||||||||||||  |||||||| ||||||| ||||||||||||||| |||||||||    
T  16529040 acctaacaaatttaatctaaaaaaattcatcgcaccaatttcattcatatcctttt 16529095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 789
Target Start/End: Original strand, 35159786 - 35159835
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctat 789  Q
    |||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  35159786 acctaacaaattttatctaaaaaaatgcatcgcaccaatttcattcctat 35159835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 19121990 - 19122042
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    |||||||||||| ||||||||| ||| ||| ||||||||||||||| ||||||    
T  19121990 acctaacaaattctatctaaaaaaatgcatcgcaccaatttcattcatatcct 19122042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 31486858 - 31486806
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  31486858 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 31486806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 43394976 - 43394924
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  43394976 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 43394924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 742 - 792
Target Start/End: Complemental strand, 26523180 - 26523130
Alignment:
Q  742 ctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  26523180 ctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 26523130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 789
Target Start/End: Complemental strand, 13035222 - 13035173
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctat 789  Q
    ||||||||||||  |||||||| ||| ||| |||||||||||||||||||    
T  13035222 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctat 13035173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 46451553 - 46451605
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  46451553 acctaacaaattccatctaaaataatgcatcgcaccaatttcattcctatcct 46451605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 3847900 - 3847952
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  3847900 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 3847952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 11220859 - 11220911
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||||||||||||||||||| ||||||    
T  11220859 acctaacaaatttcatctaaaaaaatgcattgcaccaatttcattcatatcct 11220911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 20877239 - 20877187
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  20877239 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 20877187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 47503076 - 47503024
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  47503076 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 47503024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 47503249 - 47503197
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  47503249 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 47503197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 11454288 - 11454343
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcctttt 795  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||| |||||||||    
T  11454288 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcatatcctttt 11454343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 10129520 - 10129468
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    |||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  10129520 acctaataaattctatctaaaaaaattcatcgcaccaatttcattcctatcct 10129468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 28612256 - 28612204
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  28612256 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 28612204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 28612469 - 28612417
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    |||||| ||||| ||||||||| ||| ||| ||||||||||||||||||||||    
T  28612469 acctaaaaaattttatctaaaaaaatgcatcgcaccaatttcattcctatcct 28612417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 789
Target Start/End: Complemental strand, 28612889 - 28612842
Alignment:
Q  742 ctaacaaattgtatctaaaataattcattgcaccaatttcattcctat 789  Q
    ||||||||||  |||||||||||| ||| |||||||||||||||||||    
T  28612889 ctaacaaattccatctaaaataatgcatcgcaccaatttcattcctat 28612842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 790
Target Start/End: Complemental strand, 3249822 - 3249772
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatc 790  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||    
T  3249822 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatc 3249772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 13334 - 13386
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  13334 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 13386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 12140883 - 12140831
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  12140883 acctaacaaatttcatctaaaagaatgcatcgcaccaatttcattcctatcct 12140831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 16671688 - 16671740
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  16671688 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 16671740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 17646056 - 17646108
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  17646056 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 17646108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 22324367 - 22324419
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  22324367 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 22324419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 23591436 - 23591384
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  23591436 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 23591384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 9141983 - 9141930
Alignment:
Q  740 acctaacaaattgtatctaaaataatt-cattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| || | ||||||||||||||||||||||||||    
T  9141983 acctaacaaatttcatctaaaaaaaatgcattgcaccaatttcattcctatcct 9141930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 9829002 - 9829054
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  9829002 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 9829054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 23902590 - 23902642
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    |||||||||||| ||||| ||| ||| |||||||||||||||||| |||||||    
T  23902590 acctaacaaattctatcttaaaaaatgcattgcaccaatttcatttctatcct 23902642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 792
Target Start/End: Original strand, 25068048 - 25068097
Alignment:
Q  743 taacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    |||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  25068048 taacaaattacatctaaaaaaatgcatcgcaccaatttcattcctatcct 25068097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 2481674 - 2481622
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  2481674 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 2481622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 52689641 - 52689589
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  52689641 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatcct 52689589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 48076451 - 48076506
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcctttt 795  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||| |||||||||    
T  48076451 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcttatcctttt 48076506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 8118464 - 8118517
Alignment:
Q  740 acctaacaaattgtatctaaaataatt-cattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| || | ||||||||||||||||||||||||||    
T  8118464 acctaacaaatttcatctaaaaaaaatgcattgcaccaatttcattcctatcct 8118517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 318638 - 318690
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  318638 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 318690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 792
Target Start/End: Original strand, 44263172 - 44263224
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  44263172 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatcct 44263224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 12115388 - 12115443
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcctttt 795  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||| |||||||||    
T  12115388 acctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcatatcctttt 12115443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 792
Target Start/End: Complemental strand, 3227246 - 3227193
Alignment:
Q  740 acctaacaaattgtatctaaaataatt-cattgcaccaatttcattcctatcct 792  Q
    ||||||||||||  |||||||| || | ||||||||||||||||||||||||||    
T  3227246 acctaacaaattccatctaaaaaaaatgcattgcaccaatttcattcctatcct 3227193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 789
Target Start/End: Original strand, 5429135 - 5429184
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctat 789  Q
    ||||||||||||  |||||||| ||| ||| |||||||||||||||||||    
T  5429135 acctaacaaattccatctaaaaaaatgcatagcaccaatttcattcctat 5429184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 789
Target Start/End: Complemental strand, 45417623 - 45417574
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctat 789  Q
    ||||||||||||  |||||||| ||| ||| |||||||||||||||||||    
T  45417623 acctaacaaattaaatctaaaaaaatgcatcgcaccaatttcattcctat 45417574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 795
Target Start/End: Complemental strand, 196722 - 196667
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatcctttt 795  Q
    ||||||||||||  |||||||| ||| ||| |||||||||||| ||||||||||||    
T  196722 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcactcctatcctttt 196667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 9068 - 9118
Alignment:
Q  740 acctaacaaattgtatctaaaataattcattgcaccaatttcattcctatc 790  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||||||||||    
T  9068 acctaacaaattccatctaaaaaaatgcatcgcaccaatttcattcctatc 9118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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