View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911-Insertion-5 (Length: 672)

Name: NF5911-Insertion-5
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911-Insertion-5
NF5911-Insertion-5
[»] chr4 (5 HSPs)
chr4 (340-623)||(23240576-23240862)
chr4 (9-311)||(23240270-23240570)
chr4 (609-672)||(23240884-23240947)
chr4 (307-341)||(23240516-23240550)
chr4 (243-311)||(31302539-31302606)
[»] chr1 (4 HSPs)
chr1 (397-585)||(8643747-8643935)
chr1 (243-311)||(13706378-13706445)
chr1 (390-503)||(13706501-13706615)
chr1 (391-427)||(18239856-18239892)
[»] chr3 (2 HSPs)
chr3 (520-608)||(10479257-10479346)
chr3 (611-666)||(10479581-10479636)
[»] chr2 (5 HSPs)
chr2 (229-310)||(25848791-25848872)
chr2 (603-666)||(16617288-16617351)
chr2 (398-501)||(13567071-13567174)
chr2 (308-341)||(25848820-25848853)
chr2 (603-648)||(25849040-25849085)
[»] scaffold0184 (1 HSPs)
scaffold0184 (391-434)||(28274-28317)
[»] scaffold0078 (1 HSPs)
scaffold0078 (391-434)||(44527-44570)
[»] scaffold1813 (2 HSPs)
scaffold1813 (390-503)||(428-542)
scaffold1813 (243-311)||(585-652)
[»] chr8 (2 HSPs)
chr8 (241-298)||(1550856-1550913)
chr8 (241-310)||(23877964-23878033)
[»] chr6 (1 HSPs)
chr6 (398-462)||(19273305-19273369)
[»] chr5 (1 HSPs)
chr5 (243-303)||(23062471-23062530)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 340 - 623
Target Start/End: Original strand, 23240576 - 23240862
Alignment:
Q  340 tttgaaaatctcattagcttgttagatcatgatgttaagatggaatgttgttgctgacattgttgtttagagtatgtttagatacaatttggttgttttg 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23240576 tttgaaaatctcattagcttgttagatcatgatgttaagatggaatgttattgctggcattgttgtttagagtatgtttagatacaatttggttgttttg 23240675  T
Q  440 aacttcaattaat---actaattgtgatagtttcataaaaagcattcaaggtgtttgataaaatgcccatatgaataatacattgttttttgatattttc 536  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23240676 aacttcaattaataatactaattgtgatagtttcataaaaagcattcaaggtgtttgataaaatgcccatatgaataatacattgttttttgagattttc 23240775  T
Q  537 atagacaaatctcacgtgggatctttatgaattcagtataaaatcattcgaaaaaataaccaatggtataataaagttagaaaagca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240776 atagacaaatctcacgtgggatctttatgaattcagtataaaatcattcgaaaaaataaccaatggtataataaagttagaaaagca 23240862  T

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Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 23240270 - 23240570
Alignment:
Q  9 aggattgccataatattttggtaaaaaagaaggcatgacatcgtaatattttattgagaaatagaactagagagttatttgttnnnnnnnnnnnnnntca 108  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||              |||    
T  23240270 aggattgccataatattttggtaaaaaagaaggcatgacatcataatattttattgagaaatagaactagagagttatttgttaaaaaaaaaaaa--tca 23240367  T
Q  109 taccaatttggtcaatttaagattctaagttaagagagttaaccaaatctcactatcaacatcgccgttaatttgcatttttgctcatctctatgattat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240368 taccaatttggtcaatttaagattctaagttaagagagttaaccaaatctcactatcaacatcgccgttaatttgcatttttgctcatctctatgattat 23240467  T
Q  209 tactgacatgtgcttattaaaagtatgcgtaatcctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgttagggtt 308  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240468 tactaacatgtgcttattacaagtatgcgtaatcctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgttagggtt 23240567  T
Q  309 tag 311  Q
    |||    
T  23240568 tag 23240570  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 609 - 672
Target Start/End: Original strand, 23240884 - 23240947
Alignment:
Q  609 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgtt 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240884 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgtt 23240947  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 23240516 - 23240550
Alignment:
Q  307 tttagtttgattagggtattaattttgataaattt 341  Q
    |||||||||||||||||||||||||||||||||||    
T  23240516 tttagtttgattagggtattaattttgataaattt 23240550  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 31302539 - 31302606
Alignment:
Q  243 ctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgttagggtttag 311  Q
    ||||| ||||||||| ||||||| ||||||| ||| |||| |||| |||||||||||||||| ||||||    
T  31302539 ctatttacatgcaatgtagtttgtttagggtgtta-ttttcataattttagcaaaatgttagtgtttag 31302606  T

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Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 397 - 585
Target Start/End: Original strand, 8643747 - 8643935
Alignment:
Q  397 cattgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgata 496  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||||||  ||| || ||| |||||||||||||||||||    
T  8643747 cattgttgtttagagtaggtttagatacaatgtggttgttttgaagtttaattaacactaattgtgatcattttatgaaatgcattcaaggtgtttgata 8643846  T
Q  497 aaatgcccatatgaataatacattgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattc 585  Q
    ||||||| |  ||||  || ||||||||||||| ||| |||||||||||||| | |||||||| ||||||||||||||| |||| ||||    
T  8643847 aaatgcctaagtgaaacatccattgttttttgagattatcatagacaaatcttaagtgggatcattatgaattcagtatgaaataattc 8643935  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 13706378 - 13706445
Alignment:
Q  243 ctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgttagggtttag 311  Q
    ||||| ||||||||| ||||||| ||||||| ||| |||| |||| |||||||||||||||| ||||||    
T  13706378 ctatttacatgcaatgtagtttgtttagggtgtta-ttttcataattttagcaaaatgttagtgtttag 13706445  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 13706501 - 13706615
Alignment:
Q  390 ttgctgacattgttgtttagagtatgtttagatacaatttggttg-ttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggt 488  Q
    |||||||||||||||||||||||| |||||| |||||| | ||||  |||||  || |||||| |||||||||  |||| |  ||||| ||| | |||||    
T  13706501 ttgctgacattgttgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtactagtattttaaaatgcacttaaggt 13706600  T
Q  489 gtttgataaaatgcc 503  Q
    ||||| | |||||||    
T  13706601 gtttggtgaaatgcc 13706615  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 18239856 - 18239892
Alignment:
Q  391 tgctgacattgttgtttagagtatgtttagatacaat 427  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  18239856 tgctgacattgttgtttagagtaggtttaggtacaat 18239892  T

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Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 520 - 608
Target Start/End: Original strand, 10479257 - 10479346
Alignment:
Q  520 tgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcg-aaaaaataaccaatggtataat 608  Q
    |||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||    
T  10479257 tgttttttgagattctcatagacaaatctcatgtgggatctttctgaattcagtataaaatcatttgaaaaaaataatcaatggtataat 10479346  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 666
Target Start/End: Original strand, 10479581 - 10479636
Alignment:
Q  611 agttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatg 666  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  10479581 agttataaaagcactatatagtcaatttatttgagttactttcaatattttgaatg 10479636  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 25848791 - 25848872
Alignment:
Q  229 aagtatgcgtaatcctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgttagggttta 310  Q
    ||||| || ||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  25848791 aagtaagcctaatcctattatcatacaacttagtttgattagggtgttaattttgataaatttagcaaaatgttagtgttta 25848872  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 603 - 666
Target Start/End: Original strand, 16617288 - 16617351
Alignment:
Q  603 tataataaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatg 666  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  16617288 tataatcaagttagaaaagcactatatagtcaatttagtttagttacttttaatattttgaatg 16617351  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 501
Target Start/End: Complemental strand, 13567174 - 13567071
Alignment:
Q  398 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgataa 497  Q
    |||||||| ||||||| |||||| |||||| ||||||||||||| || |||| | || |||||||| ||||| |||    ||| |||||||||||||| |    
T  13567174 attgttgtatagagtaggtttaggtacaatgtggttgttttgaagttgaatttacacaaattgtgacagttttatattttgcactcaaggtgtttgatga 13567075  T
Q  498 aatg 501  Q
    ||||    
T  13567074 aatg 13567071  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 25848820 - 25848853
Alignment:
Q  308 ttagtttgattagggtattaattttgataaattt 341  Q
    |||||||||||||||| |||||||||||||||||    
T  25848820 ttagtttgattagggtgttaattttgataaattt 25848853  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 648
Target Start/End: Original strand, 25849040 - 25849085
Alignment:
Q  603 tataataaagttagaaaagcactatatagtcaatttagtttagtta 648  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||||    
T  25849040 tataatcaagttataaaagcaatatatagccaatttagtttagtta 25849085  T

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Target: scaffold0184 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 434
Target Start/End: Complemental strand, 28317 - 28274
Alignment:
Q  391 tgctgacattgttgtttagagtatgtttagatacaatttggttg 434  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||    
T  28317 tgctgacattgttgtttagagtaggtttaggtacaatttagttg 28274  T

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Target: scaffold0078 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 44527 - 44570
Alignment:
Q  391 tgctgacattgttgtttagagtatgtttagatacaatttggttg 434  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||    
T  44527 tgctgacattgttgtttagagtaggtttaggtacaatttagttg 44570  T

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Target: scaffold1813 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 542 - 428
Alignment:
Q  390 ttgctgacattgttgtttagagtatgtttagatacaatttggttg-ttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggt 488  Q
    |||||| ||||||||||||||||| ||||||||||||| | ||||  |||||  || |||||| | |||||||| |||| |  ||||| ||| | |||||    
T  542 ttgctggcattgttgtttagagtaggtttagatacaatgtagttgaatttgatgttgaattaacagtaattgtgctagtattttaaaatgcacttaaggt 443  T
Q  489 gtttgataaaatgcc 503  Q
    |||| || |||||||    
T  442 gtttaatgaaatgcc 428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1813; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 652 - 585
Alignment:
Q  243 ctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgttagggtttag 311  Q
    ||||| ||||||||| ||||||| ||||| | ||| |||| |||| |||||||||||||||| ||||||    
T  652 ctatttacatgcaatgtagtttgtttaggatgtta-ttttcataattttagcaaaatgttagtgtttag 585  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 1550856 - 1550913
Alignment:
Q  241 tcctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaa 298  Q
    ||||||| ||||||||| ||| ||| ||||||||||| |||| |||| ||||||||||    
T  1550856 tcctatttacatgcaatgtagattgtttagggtattagttttcataattttagcaaaa 1550913  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 23877964 - 23878033
Alignment:
Q  241 tcctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgttagggttta 310  Q
    ||||||| ||||||||| ||| ||| ||||||| ||| |||| |||| ||||||||||| |||| |||||    
T  23877964 tcctatttacatgcaatgtagattgtttagggtgttagtttttataattttagcaaaattttagtgttta 23878033  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 19273369 - 19273305
Alignment:
Q  398 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtg 462  Q
    |||||||||||||||| |||||| |||||| | ||||||| ||  ||||| ||| ||||||||||    
T  19273369 attgttgtttagagtaggtttaggtacaatgtagttgtttagatgttcaaataacactaattgtg 19273305  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 23062471 - 23062530
Alignment:
Q  243 ctattaacatgcaatttagtttgattagggtattaattttgataaatttagcaaaatgtta 303  Q
    ||||| ||||||||| ||||||| ||||||| ||| |||| |||| |||||||||||||||    
T  23062471 ctatttacatgcaatgtagtttgtttagggtgtta-ttttcataattttagcaaaatgtta 23062530  T

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