View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911-Insertion-7 (Length: 513)
Name: NF5911-Insertion-7
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911-Insertion-7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 104 - 513
Target Start/End: Original strand, 2892538 - 2892943
Alignment:
| Q |
104 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaatatat |
203 |
Q |
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| T |
2892538 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgctagtcatttccaaatcaatcttcttttaccaaattctggaatatat |
2892637 |
T |
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| Q |
204 |
attacatgaggtgttatgatgtgatactggatactttcaataaaacaaaacaaggaattaacatgttcaatcaaattcgactctaattattcatacttgt |
303 |
Q |
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| T |
2892638 |
attacatgaggtgttatgatgtgatactggatactttcaataaaacaaaacaaggaattaacatgttcaatcaaattcgactctaattattcatacttgt |
2892737 |
T |
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| Q |
304 |
cttaaacatataagtacaaggtacataaccagaatacaacatagttcttcacaatggataatcaaaacacatgtcttaatcattaaggacataatatgat |
403 |
Q |
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| T |
2892738 |
cttaaacatataagtacaaggtacataaccagaatacaacatagttcttcacaatggataatcaaaacacatgtcttaatcattaaggacataatatgat |
2892837 |
T |
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| Q |
404 |
tatgatatatagggagctacatgataactcatatcagtcaacaaacatgaaatttcatgagataaaacataagacacaactaagcttcaactaaatggcc |
503 |
Q |
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| T |
2892838 |
tatgatatatagggagctacatgataactcatatcagtc----aacatgaaatttcatgagataaaacataagacacaactaagcttcaagtaaatggcc |
2892933 |
T |
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| Q |
504 |
ttctctttcc |
513 |
Q |
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| T |
2892934 |
ttctccttcc |
2892943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 2878124 - 2878218
Alignment:
| Q |
104 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaa |
198 |
Q |
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| T |
2878124 |
ctcactcactttttccatacgtagattcatcaaattgattgttagcgacgccgccatacatttccaaatcaatcttcttataccaaatcctggaa |
2878218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 2793781 - 2793726
Alignment:
| Q |
131 |
catcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttac |
186 |
Q |
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| T |
2793781 |
catcaaattcattgttagcgccgacgccatacatttccaaatcaatcttcttttac |
2793726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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