View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911-Insertion-8 (Length: 505)
Name: NF5911-Insertion-8
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911-Insertion-8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Original strand, 27521991 - 27522485
Alignment:
| Q |
9 |
ataattaagcttacagtacactaatagcgtcttcaaaatagggaaactacaaaacatagagctaaatatatatattgataataccatccacctttaataa |
108 |
Q |
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| T |
27521991 |
ataattaagcttacagtacactattagcgtcttcaaaatagggaaactacaaaacatagagccaaatatatatattgataataccatccacctttaataa |
27522090 |
T |
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| Q |
109 |
ggttttcatcaaaagcatccaagatggcaggtatacaatggttccagggtaaggtcaagttcattcctccccatttctggtgcttcctcacggtaattgc |
208 |
Q |
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| T |
27522091 |
ggttttcatcaaaagcatccaagatggcaggtatacaatggttccagggtaaggtcaagttcattcctccccatttctggtgcttcctcacggtaattgc |
27522190 |
T |
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| Q |
209 |
cactgcaaatannnnnnnnn-actatgatcagtaactactaatgaaggacaagaattgaagtggtaaatgtgacataatttaataattaataatgcatat |
307 |
Q |
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| T |
27522191 |
cactgcaaatatattttttttactatgatcagtaactactaatgaaggacaagaattgaagtggtaaatgtgacataatttaat---taataatgcatag |
27522287 |
T |
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| Q |
308 |
gttatagaaatgttacccaccccatgttcaaagttggaagttgctgctgtagtaagtaatttggattaactccatgatggtttgggtgctcccattgtgc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27522288 |
gttatagaaatgttacccaccccatgttcaaagttggaagttgctgctgtagtaagtaatttggattaactccatgatggtttgggtgctcccattgtgc |
27522387 |
T |
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| Q |
408 |
ctgctgctgagctgcaatcttttccttctccttgatctataattatttttgaaaatgtgtcatggaaaataataaagaatcttagccttgattaatta |
505 |
Q |
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| T |
27522388 |
ctgctgctgagctgcaatcttttccttctccttgatctataattatttttgaaaatgtgtcatggaaaacaataaagaatcttagccttgattaatta |
27522485 |
T |
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