View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_11 (Length: 420)
Name: NF5911_high_11
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 37757733 - 37757341
Alignment:
| Q |
12 |
tattctgtgtaggtgcgcttatatattttaggatgtttacagtttatcgcatcattaagctggtcaaatttttaatgtgaccataaagttactaccggca |
111 |
Q |
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| T |
37757733 |
tattctgtgtaggtgcgcttatatattttaggatgtttacagtttatcgcatcattaagctggtcaaatttttaatgtgaccataaagttactaccggca |
37757634 |
T |
|
| Q |
112 |
cttaccatacatatgctggctttagtcgctggtggaccttgttcacactcatatctaaagaaaaatcatgaaatttcagctgcttagttatgtgtgtgcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37757633 |
cttaccatacatatgctggctttagtcgctggtgaaccttgttcacactcatatctaaagaaaaatcataaaatttcagctgcttagttatgtgtgtgcc |
37757534 |
T |
|
| Q |
212 |
ttgaaagcatttcacatgtgcgcaggttaaaaagtcaaggtgtttggtagctgatcgccatcagtgctttctggtttttctttgataatttaatgaatat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757533 |
ttgaaagcatttcacatgtgcgcaggttaaaaagtcaaggtgtttggtagctgatcgctatcagtgctttctggtttttctttgataatttaatgaatat |
37757434 |
T |
|
| Q |
312 |
tctt-attcagaatcagcatccaatgcattggattaagctactcgtacgtgtattcttgtgtatatagaagtacctgtcacagggtatagagt |
403 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757433 |
tcttaattcagaatcagcatccaatgcattggattaagctactcgtacgtgtattcttgtgtatatagaagtacctgtcacagggtatagagt |
37757341 |
T |
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