View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_12 (Length: 381)
Name: NF5911_high_12
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 32 - 371
Target Start/End: Complemental strand, 7199348 - 7199003
Alignment:
| Q |
32 |
atattcatagatatagcatatggaaaaataatgtatacttacaatctgcatctgttttgatccaatgctctctgtaagaagatggatcttcttctggatg |
131 |
Q |
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| T |
7199348 |
atattcatagacatagcatatgaaaaaataatgtatacttacaatctgcatctgttttgatccaatgctctctgtaagaagatggatcttcttctggatg |
7199249 |
T |
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| Q |
132 |
cacaaggtagcctttgttgtgacctccatcattcatatttttcttcttgttctcattctttcgatgtttaccagatttgtgtccaactgttgaattttct |
231 |
Q |
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| T |
7199248 |
cacaaggtagcctttgttgggacctccatcattcatatttttcttcttgttctcattctttcgatgtttaccagatttgtgtccaactgttgaattttct |
7199149 |
T |
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| Q |
232 |
ggatgaacttttttccggaacatatggagaatctagaaaccaaaacca------aaactcataatcatgaacagaacaataccatttatctaccaagacc |
325 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7199148 |
ggatgaacttttttcctgaacatatggagaatctagaaaccaaaaccaaaaccaaaacttataatcatgaacagaacaataccatttatctaccaagacc |
7199049 |
T |
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| Q |
326 |
aaaaacagtgatgtgaattggttagaacagtttacagaggcctatg |
371 |
Q |
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| T |
7199048 |
aaaaacagtgatgtgaataggtcagaacagtttacagaggcctatg |
7199003 |
T |
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