View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5911_high_13 (Length: 380)
Name: NF5911_high_13
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 19469720 - 19470075
Alignment:
| Q |
8 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19469720 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatga |
19469819 |
T |
|
| Q |
108 |
ttttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
19469820 |
ttttggtcaaggactgctgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatc |
19469919 |
T |
|
| Q |
208 |
tagggaatattattagatgttttcacgttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
307 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19469920 |
tagagaatattattagatgttttcaggttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
19470019 |
T |
|
| Q |
308 |
gctcatttggctcttcaggttcctgataggatttggtgggaggaagtacttgaatc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19470020 |
gctcatttggctcttcaggttcctgataggatttggttagaggaagtacttgaatc |
19470075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 47865596 - 47865355
Alignment:
| Q |
10 |
agatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgatt |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
47865596 |
agatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgatt |
47865497 |
T |
|
| Q |
110 |
ttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatcta |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
47865496 |
ttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatcta |
47865397 |
T |
|
| Q |
210 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47865396 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
47865355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 243 - 363
Target Start/End: Complemental strand, 47864488 - 47864368
Alignment:
| Q |
243 |
aacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
342 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47864488 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
47864389 |
T |
|
| Q |
343 |
gtgggaggaagtacttgaatc |
363 |
Q |
| |
|
|| ||||||||| |||||||| |
|
|
| T |
47864388 |
gttggaggaagtgcttgaatc |
47864368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University