View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911_high_18 (Length: 340)

Name: NF5911_high_18
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911_high_18
NF5911_high_18
[»] chr7 (1 HSPs)
chr7 (11-326)||(30955178-30955492)
[»] chr3 (1 HSPs)
chr3 (62-142)||(32706010-32706090)
[»] chr1 (2 HSPs)
chr1 (64-142)||(30882823-30882901)
chr1 (228-273)||(48632327-48632372)
[»] chr4 (1 HSPs)
chr4 (59-139)||(35530302-35530382)
[»] chr8 (2 HSPs)
chr8 (223-273)||(15131738-15131788)
chr8 (228-278)||(14469733-14469783)
[»] chr2 (3 HSPs)
chr2 (223-273)||(32200614-32200664)
chr2 (222-273)||(17651627-17651678)
chr2 (227-273)||(41849370-41849416)
[»] chr6 (1 HSPs)
chr6 (228-273)||(19294695-19294740)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 30955492 - 30955178
Alignment:
Q  11 cataggatactaacactgctacataggcgtgtcaaaggaaagaagaagaaaaatgggacacttgttcgagttgttcgacatgtgtggtatgagtgtcata 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955492 cataggatactaacactgctacataggcgtgtcaaagcaaagaagaagaaaaatgggacacttgttcgagttgttcgacatgtgtggtatgagtgtcata 30955393  T
Q  111 caagtgtcagacaccgacccaagaagtgtcgatacaaaaataaataaattaggataccagtttgaggtagtccgacacggtgtcatatgagtgtcgtaca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  30955392 caagtgtcagacaccgacccaagaagtgtcgatacaaaaataaataaattaggataccagtttgaggtagtccgacac-gtgtcatatgagtgtcataca 30955294  T
Q  211 agtgtgaacattgacacgtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttcgtacattatctaccttaaaattatgaaaggtcctggt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30955293 agtgtgaacattgacacgtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttcgtacattatctaccttaaaattatgaaaggtcctagt 30955194  T
Q  311 ttgcattttgatattg 326  Q
    ||||||||||||||||    
T  30955193 ttgcattttgatattg 30955178  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 32706090 - 32706010
Alignment:
Q  62 aatgggacacttgttcgagttgttcgacatgtgtggtatgagtgtcatacaagtgtcagacaccgacccaagaagtgtcga 142  Q
    |||||||||||||| |||||||| | |||||||| |||||||| ||||||| ||||| |||| ||| |||| |||||||||    
T  32706090 aatgggacacttgtccgagttgtccaacatgtgttgtatgagtatcatacaggtgtcggacaacgatccaacaagtgtcga 32706010  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 30882901 - 30882823
Alignment:
Q  64 tgggacacttgttcgagttgttcgacatgtgtggtatgagtgtcatacaagtgtcagacaccgacccaagaagtgtcga 142  Q
    |||||||||||| |||||||| ||||| |||  |||||||||||| ||| ||||||||| ||||  |||||||||||||    
T  30882901 tgggacacttgtccgagttgtccgacacgtgatgtatgagtgtcaaacaggtgtcagaccccgattcaagaagtgtcga 30882823  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 48632372 - 48632327
Alignment:
Q  228 gtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttc 273  Q
    ||||||||||||||||||| |||| | ||||||| |||||||||||    
T  48632372 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttc 48632327  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 35530302 - 35530382
Alignment:
Q  59 aaaaatgggacacttgttcgagttgttcgacatgtgtggtatgagtgtcatacaagtgtcagacaccgacccaagaagtgt 139  Q
    |||| |||||||||||| |||||||| ||||| |||| |||| ||||||||| | ||||  |||||||||||||| |||||    
T  35530302 aaaattgggacacttgtccgagttgtccgacacgtgttgtataagtgtcatataggtgtaggacaccgacccaaggagtgt 35530382  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 15131788 - 15131738
Alignment:
Q  223 gacacgtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttc 273  Q
    |||||||||||||||||||||||| |||| | ||||||| |||||||||||    
T  15131788 gacacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttc 15131738  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 14469783 - 14469733
Alignment:
Q  228 gtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttcgtaca 278  Q
    |||||||||||| ||||||||||| ||||||||| |||| |||||| ||||    
T  14469783 gtgtcggacaccacgacacacctagtgctagaggtgtccatgcttcataca 14469733  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 32200664 - 32200614
Alignment:
Q  223 gacacgtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttc 273  Q
    |||||||||||||||||||||||| |||| | ||||||| |||||||||||    
T  32200664 gacacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttc 32200614  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 17651627 - 17651678
Alignment:
Q  222 tgacacgtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttc 273  Q
    |||| |||||||||||||||||||| |||||| ||| ||| |||||||||||    
T  17651627 tgacgcgtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgcttc 17651678  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 41849370 - 41849416
Alignment:
Q  227 cgtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttc 273  Q
    |||||| ||||||||||||| |||||| ||||||| |||||||||||    
T  41849370 cgtgtctgacaccgcgacacgcctaattctagaggtgtccgtgcttc 41849416  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 19294695 - 19294740
Alignment:
Q  228 gtgtcggacaccgcgacacacctaatgctagaggggtccgtgcttc 273  Q
    ||||||||||||||||||| |||||| ||||||| ||| |||||||    
T  19294695 gtgtcggacaccgcgacacgcctaatcctagaggtgtcggtgcttc 19294740  T

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