View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_20 (Length: 315)
Name: NF5911_high_20
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 5857064 - 5856782
Alignment:
| Q |
19 |
aaatatttgatagtaaaagaaaaacagaaagaagaatcttcccataagttgaactaaactttgtcatttttaatgttcacttccactctctttttcttta |
118 |
Q |
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| T |
5857064 |
aaatatttgatagtaaaagaaaaacagaaagaagaattttcccataagttgaactaaactttgtcatttttaatgttcacttccactctctttttcttta |
5856965 |
T |
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| Q |
119 |
tgagaatttccaatggattttaatagagtactctagttcttgatgttatcaaaattgtgtctattgtcaacaaataaattactgttaataaatatgaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
5856964 |
tgagaatttccaatggattttaatagagtactctagttcttgatgttatcaaaattgtgtctattgccaacaaataaattactattaataaatatgaaaa |
5856865 |
T |
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| Q |
219 |
tttggaataacacgacattgattagtacaaattaatagagtactcaatattgttttttcttctttacaaaagtccacttaatatt |
303 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5856864 |
tttgga--aacacgacattgattagtacaaattaatagagtactcaatattgttttttcttctttacaaaagtccacttaatatt |
5856782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 5863861 - 5863745
Alignment:
| Q |
18 |
caaatatttgatagtaaaagaaaaacagaaagaaga---atcttcccataagttgaactaaactttgtcatttttaatgttcacttcc-actctcttttt |
113 |
Q |
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|||||||||||||||||||| |||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
5863861 |
caaatatttgatagtaaaagcaaaatagaaagaagatgaaccttcccataagttgaacttaactttgtcatttttaatgttcacttccaactctcttttt |
5863762 |
T |
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| Q |
114 |
ctttatgagaatttcca |
130 |
Q |
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| T |
5863761 |
ctttatgagaatttcca |
5863745 |
T |
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