View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911_high_21 (Length: 308)

Name: NF5911_high_21
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911_high_21
NF5911_high_21
[»] chr4 (2 HSPs)
chr4 (17-243)||(23240633-23240862)
chr4 (229-298)||(23240884-23240953)
[»] chr1 (1 HSPs)
chr1 (16-205)||(8643746-8643935)
[»] chr3 (2 HSPs)
chr3 (140-228)||(10479257-10479346)
chr3 (231-286)||(10479581-10479636)
[»] chr2 (3 HSPs)
chr2 (223-298)||(16617288-16617363)
chr2 (18-121)||(13567071-13567174)
chr2 (223-268)||(25849040-25849085)
[»] chr6 (1 HSPs)
chr6 (18-82)||(19273305-19273369)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 23240633 - 23240862
Alignment:
Q  17 cattgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaat---actaattgtgatagtttcataaaaagcattcaaggtgtttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  23240633 cattgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaataatactaattgtgatagtttcataaaaagcattcaaggtgtttg 23240732  T
Q  114 ataaaatgcccatatgaataatacattgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcgaaaaaat 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240733 ataaaatgcccatatgaataatacattgttttttgagattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcgaaaaaat 23240832  T
Q  214 aaccaatggtataataaagttagaaaagca 243  Q
    ||||||||||||||||||||||||||||||    
T  23240833 aaccaatggtataataaagttagaaaagca 23240862  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 23240884 - 23240953
Alignment:
Q  229 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240884 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 23240953  T

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Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 8643746 - 8643935
Alignment:
Q  16 tcattgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgat 115  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||||||  ||| || ||| ||||||||||||||||||    
T  8643746 tcattgttgtttagagtaggtttagatacaatgtggttgttttgaagtttaattaacactaattgtgatcattttatgaaatgcattcaaggtgtttgat 8643845  T
Q  116 aaaatgcccatatgaataatacattgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattc 205  Q
    |||||||| |  ||||  || ||||||||||||| ||| |||||||||||||| | |||||||| ||||||||||||||| |||| ||||    
T  8643846 aaaatgcctaagtgaaacatccattgttttttgagattatcatagacaaatcttaagtgggatcattatgaattcagtatgaaataattc 8643935  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 10479257 - 10479346
Alignment:
Q  140 tgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcg-aaaaaataaccaatggtataat 228  Q
    |||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||    
T  10479257 tgttttttgagattctcatagacaaatctcatgtgggatctttctgaattcagtataaaatcatttgaaaaaaataatcaatggtataat 10479346  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 10479581 - 10479636
Alignment:
Q  231 agttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatg 286  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  10479581 agttataaaagcactatatagtcaatttatttgagttactttcaatattttgaatg 10479636  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 16617288 - 16617363
Alignment:
Q  223 tataataaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 298  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |||||||||    
T  16617288 tataatcaagttagaaaagcactatatagtcaatttagtttagttacttttaatattttgaatgatggttcctatg 16617363  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 13567174 - 13567071
Alignment:
Q  18 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgataa 117  Q
    |||||||| ||||||| |||||| |||||| ||||||||||||| || |||| | || |||||||| ||||| |||    ||| |||||||||||||| |    
T  13567174 attgttgtatagagtaggtttaggtacaatgtggttgttttgaagttgaatttacacaaattgtgacagttttatattttgcactcaaggtgtttgatga 13567075  T
Q  118 aatg 121  Q
    ||||    
T  13567074 aatg 13567071  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 25849040 - 25849085
Alignment:
Q  223 tataataaagttagaaaagcactatatagtcaatttagtttagtta 268  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||||    
T  25849040 tataatcaagttataaaagcaatatatagccaatttagtttagtta 25849085  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19273369 - 19273305
Alignment:
Q  18 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtg 82  Q
    |||||||||||||||| |||||| |||||| | ||||||| ||  ||||| ||| ||||||||||    
T  19273369 attgttgtttagagtaggtttaggtacaatgtagttgtttagatgttcaaataacactaattgtg 19273305  T

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