View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5911_high_3 (Length: 638)

Name: NF5911_high_3
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5911_high_3
NF5911_high_3
[»] chr4 (7 HSPs)
chr4 (1-638)||(26646928-26647575)
chr4 (1-281)||(13682538-13682803)
chr4 (27-281)||(13669681-13669920)
chr4 (1-159)||(13689216-13689371)
chr4 (40-104)||(22188303-22188367)
chr4 (81-159)||(13687264-13687342)
chr4 (211-255)||(13687186-13687230)
[»] chr8 (5 HSPs)
chr8 (27-481)||(37001797-37002241)
chr8 (322-453)||(36992369-36992500)
chr8 (27-273)||(36992080-36992317)
chr8 (480-613)||(37002274-37002409)
chr8 (583-614)||(36992498-36992529)
[»] chr7 (2 HSPs)
chr7 (322-383)||(8596996-8597057)
chr7 (230-284)||(8596901-8596959)
[»] chr3 (2 HSPs)
chr3 (483-588)||(27442791-27442895)
chr3 (483-588)||(27445947-27446051)
[»] chr1 (1 HSPs)
chr1 (483-580)||(12796262-12796358)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Original strand, 26646928 - 26647575
Alignment:
Q  1 caactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaagga 100  Q
    ||||||||| |||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26646928 caactcaaaacaatctttctcaattatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgcataatatctccattagcaaagga 26647027  T
Q  101 gatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccacttt 200  Q
    ||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||    
T  26647028 gatgtcacaacaccatctataaaaaattcatgcaccaaggcttccttaattacatcttccttttcccgaatcattatgttcgttgaacttttgccacttt 26647127  T
Q  201 ctttcatttctttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnn 300  Q
    |||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||         
T  26647128 ctttcat---------gaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcagacaaaaaacttgagggagtgtgacgcccgttttt 26647218  T
Q  301 nnnnnnnnn-gaatnnnnnnntatgggtttcaaaattatatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttct 399  Q
              ||||        |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26647219 tttttttgttgaataacaaaacatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagactcct 26647318  T
Q  400 acaaaagcatcaaatacaaacttagactcctacaacgtttgtacaacatctgtactgttgaaactgatttacttagctatatt----------------- 482  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||||||                     
T  26647319 acaaaagcataaaatacaaacttagactcctgcaacgttggtacaacatttgtactgttgaaa-tgatttacttagctatattgttcctatcctgtaatt 26647417  T
Q  483 ----attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatct 578  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26647418 aattattcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatct 26647517  T
Q  579 ctccgtaaggatattaaagacacctcttgtgcactcaaacaatatactgataaattccct 638  Q
    |||||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  26647518 ctccgtaaagatattaaagacaactcttgtgcactcaaaca--atactgataaattccct 26647575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 13682803 - 13682538
Alignment:
Q  1 caactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaagga 100  Q
    ||||||||||| || |||||  | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| |||||||||||||||    
T  13682803 caactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaagga 13682704  T
Q  101 gatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccacttt 200  Q
    ||||||||||||||| |          || | ||||||||||||||||||||||||||| | |||||||| |||| || || ||    |||   |||       
T  13682703 gatgtcacaacaccaaccacaaaaaagtgctccaccaaggcttccttaattacatcttcttcttcccaaaacatt-tggtcctt----ttg-atcac--- 13682613  T
Q  201 ctttcatttctttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagg 281  Q
          ||| ||||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  13682612 ------tttttttcatgaaagcacagaagctgcaaatattgaaaaatcatattagttaattagcaaacaaaaaatttgagg 13682538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 281
Target Start/End: Complemental strand, 13669920 - 13669681
Alignment:
Q  27 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn 126  Q
    ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||| |             
T  13669920 tgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacaccaaccacaaaaaa 13669821  T
Q  127 ttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaa 226  Q
     || | ||||||||||||||||||||||||||| | |||||||| |||| || || ||    |||   |||         ||| ||||||||||| |||     
T  13669820 gtgctccaccaaggcttccttaattacatcttcttcttcccaaaacatt-tggtcctt----ttg-atcac---------tttttttcatgaaagcacag 13669736  T
Q  227 aatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagg 281  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  13669735 aagctgcaaatattgaaaaatcatattagttaattagcaaacaaaaaatttgagg 13669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 13689371 - 13689216
Alignment:
Q  1 caactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaagga 100  Q
    ||||||||||| || |||||  | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| |||||   | |||||||||||||||    
T  13689371 caactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtata---tgtccattagcaaagga 13689275  T
Q  101 gatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttc 159  Q
    ||||||||||||||||||         || | |||||||||||||||||||||||||||    
T  13689274 gatgtcacaacaccatctagaaaaaagtgctccaccaaggcttccttaattacatcttc 13689216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 22188303 - 22188367
Alignment:
Q  40 cgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatg 104  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||| ||||||| |||||||||||    
T  22188303 cgtagtattgttagcatttattgattgataaccattgtataatatgtccattatcaaaggagatg 22188367  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 13687342 - 13687264
Alignment:
Q  81 atatctccattagcaaaggagatgtcacaacaccatctnnnnnnnnttgatgcaccaaggcttccttaattacatcttc 159  Q
    |||| |||||||||||||||||||||||||||||||||         || | |||||||||||||||||||||||||||    
T  13687342 atatgtccattagcaaaggagatgtcacaacaccatctagaaaaaagtgctccaccaaggcttccttaattacatcttc 13687264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 13687230 - 13687186
Alignment:
Q  211 tttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttag 255  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  13687230 tttcatgaaagcacagaatctgcaaatattgaaaaatcatattag 13687186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 27 - 481
Target Start/End: Original strand, 37001797 - 37002241
Alignment:
Q  27 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn 126  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||            
T  37001797 tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaa 37001896  T
Q  127 ttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaa 226  Q
     || | ||||||||||||| ||||||||||||  |||||||||| ||||  || | ||||| ||  |||||||||||      ||   |||||||||||     
T  37001897 gtgcttcaccaaggcttccataattacatcttgtttttcccaaaacatttggtcctttgaaatttggccactttctt------ct---atgaaagtacag 37001987  T
Q  227 aatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnnnnnnnnnnngaatnnnnnnntatggg 326  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||              ||||        |||||    
T  37001988 aatctgcaaatattgaaaaatcatattagttaattagcaaacaaaaaatttgagggagtgtgacgaccgttttttttttgtt-gaataacaaaacatggg 37002086  T
Q  327 tttcaaaattatatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaatacaaacttagac 426  Q
    ||||||||||  |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  37002087 tttcaaaatttcatttctcataaattaagagtataacatttaaattcacaacatttatacaacatagactcctacaaaagcatcaaatacaaacttagac 37002186  T
Q  427 tcctacaacgtttgtacaacatctgtactgttgaaactgatttacttagctatat 481  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37002187 tcctgcaacgtttgtacaacatttgtactgttgaaactgatttacttagctatat 37002241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 322 - 453
Target Start/End: Original strand, 36992369 - 36992500
Alignment:
Q  322 atgggtttcaaaattatatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaatacaaact 421  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36992369 atgggtttcaaaatttcatttctcataaattaagagtatcacatttaaattcacaacatttgtacaacatagactcctacaaaagcatcaaatacaaact 36992468  T
Q  422 tagactcctacaacgtttgtacaacatctgta 453  Q
    ||||||||| ||||||||||||||||| ||||    
T  36992469 tagactcctgcaacgtttgtacaacatttgta 36992500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 36992080 - 36992317
Alignment:
Q  27 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatctnnnnnnnn 126  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||            
T  36992080 tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatctacaaagaa 36992179  T
Q  127 ttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttctttcatttctttcatgaaagtacaa 226  Q
     || | ||||||||||||| ||||||||||||  |||||||||| ||||  || | ||||| ||  | |||||||      ||||   |||||||||||     
T  36992180 gtgcttcaccaaggcttccataattacatcttgtttttcccaaaacatttggtcctttgaaatttggtcactttc------ttct---atgaaagtacag 36992270  T
Q  227 aatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaa 273  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  36992271 aatctgcaaatattgaaaaatcatattagttaattagcaaacaaaaa 36992317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 480 - 613
Target Start/End: Original strand, 37002274 - 37002409
Alignment:
Q  480 attattcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 579  Q
    ||||||||||||| | ||| ||||| | |||||||||||||||  ||||||||||||| ||| ||| | || |||||||||||||||| |||||||||||    
T  37002274 attattcctatttgttagggagtgctaatggaattgacttagtgtttccacaattcacatttaagttagtgtagtcattttatttagttgttttcatctc 37002373  T
Q  580 tccgtaagg--atattaaagacacctcttgtgcact 613  Q
    | |||||||  ||||||||| |||||||| ||||||    
T  37002374 ttcgtaaggctatattaaagccacctcttttgcact 37002409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 614
Target Start/End: Original strand, 36992498 - 36992529
Alignment:
Q  583 gtaaggatattaaagacacctcttgtgcactc 614  Q
    ||||||||||||||||||||||||||||||||    
T  36992498 gtaaggatattaaagacacctcttgtgcactc 36992529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 8596996 - 8597057
Alignment:
Q  322 atgggtttcaaaattatatttctcataaattaagaatatcacatttaaattcacaacatttg 383  Q
    ||||||| |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  8596996 atgggttccaaaatttcatttctcataaattaagagtatcacatttaaattcacaacatttg 8597057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 8596901 - 8596959
Alignment:
Q  230 ctgcaaatattgaaaaatcat----gttagttaattagcaaacaaaaaacttgagggag 284  Q
    |||||||||||||||||||||     ||||||||||||||||||||||| || ||||||    
T  8596901 ctgcaaatattgaaaaatcatattaattagttaattagcaaacaaaaaattttagggag 8596959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 588
Target Start/End: Original strand, 27442791 - 27442895
Alignment:
Q  483 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctctcc 582  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| |||||| | ||| |||| ||     
T  27442791 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagttggttttatctatct 27442889  T
Q  583 gtaagg 588  Q
    ||||||    
T  27442890 gtaagg 27442895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 588
Target Start/End: Original strand, 27445947 - 27446051
Alignment:
Q  483 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctctcc 582  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| |||||| | ||| |||| ||     
T  27445947 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagttggttttatctatct 27446045  T
Q  583 gtaagg 588  Q
    ||||||    
T  27446046 gtaagg 27446051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 580
Target Start/End: Original strand, 12796262 - 12796358
Alignment:
Q  483 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctct 580  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| |||||| | ||| ||||||    
T  12796262 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagttggttttatctct 12796358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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