View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_31 (Length: 259)
Name: NF5911_high_31
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_31 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 115 - 259
Target Start/End: Original strand, 2892538 - 2892682
Alignment:
| Q |
115 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaatatat |
214 |
Q |
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| T |
2892538 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgctagtcatttccaaatcaatcttcttttaccaaattctggaatatat |
2892637 |
T |
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| Q |
215 |
attacatgaggtgttatgatgtgatactggatactttcaataaaa |
259 |
Q |
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| T |
2892638 |
attacatgaggtgttatgatgtgatactggatactttcaataaaa |
2892682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 2878124 - 2878218
Alignment:
| Q |
115 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaa |
209 |
Q |
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| T |
2878124 |
ctcactcactttttccatacgtagattcatcaaattgattgttagcgacgccgccatacatttccaaatcaatcttcttataccaaatcctggaa |
2878218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 2793781 - 2793726
Alignment:
| Q |
142 |
catcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttac |
197 |
Q |
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| T |
2793781 |
catcaaattcattgttagcgccgacgccatacatttccaaatcaatcttcttttac |
2793726 |
T |
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