View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_32 (Length: 252)
Name: NF5911_high_32
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 1277273 - 1277049
Alignment:
| Q |
21 |
gttacatatgatatggttgcacattaatgttctataaaaattgtatg----taattcaggcattggttgcagtaagtgaagtgatgcaacaattgaatga |
116 |
Q |
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| T |
1277273 |
gttacatatgatatggttgcacattaatgttctataaaaattgtatgcatgtaattcaggcattggttgcagtaagtgaagtgatgcaacaattgaatga |
1277174 |
T |
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| Q |
117 |
gaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgttgtcattaggatgtggaagaaacacgattctagggcctggttct |
216 |
Q |
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| T |
1277173 |
gaagaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgttgtcattaggatgtggaagaaacacgattctagggcctggttct |
1277074 |
T |
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| Q |
217 |
ttacttgcaaaatccttctcgtata |
241 |
Q |
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|||||||||||| |||||||||||| |
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| T |
1277073 |
ttacttgcaaaaaccttctcgtata |
1277049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 1196375 - 1196265
Alignment:
| Q |
83 |
ttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgttgtcattagg |
182 |
Q |
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| T |
1196375 |
ttgcagtgaatgaagtgatgcaagaattggaggagaaaaattatgatttcatacctgtgaatccaaacgaacctaccaaattcgtgttgttgtcattagg |
1196276 |
T |
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| Q |
183 |
atgtggaagaa |
193 |
Q |
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| T |
1196275 |
atgtggaagaa |
1196265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 1224395 - 1224283
Alignment:
| Q |
71 |
ttcaggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgtt |
170 |
Q |
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| T |
1224395 |
ttcaggcattggttgcggtgagtgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtgacggcaaacaagccaaccaaaatcgtgtt |
1224296 |
T |
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| Q |
171 |
gttgtcattagga |
183 |
Q |
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| T |
1224295 |
gttgtcaatagga |
1224283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 1242636 - 1242517
Alignment:
| Q |
73 |
caggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgt |
172 |
Q |
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| T |
1242636 |
caggcattgcttgcagtgagtgaagtgataaaactattagaggaaaagaattctgatttcatttctgtgaatgaaaatcaacctaccaaaatcctcttgt |
1242537 |
T |
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| Q |
173 |
tgtcattaggatgtggaaga |
192 |
Q |
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| T |
1242536 |
tatcattaggatgtggaaga |
1242517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 1253335 - 1253216
Alignment:
| Q |
73 |
caggcattggttgcagtaagtgaagtgatgcaacaattgaatgagaaaaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgt |
172 |
Q |
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||||||||| ||||||| ||||||||||| ||| ||| | || || ||| || |||||||| |||||||| ||| |||||||||||||| | |||| |
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| T |
1253335 |
caggcattgcttgcagtgagtgaagtgataaaactattagaggaaaagaattctgatttcatttctgtgaatgaaaatcaacctaccaaaatcctcttgt |
1253236 |
T |
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| Q |
173 |
tgtcattaggatgtggaaga |
192 |
Q |
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| T |
1253235 |
tatcattaggatgtggaaga |
1253216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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