View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5911_high_41 (Length: 248)
Name: NF5911_high_41
Description: NF5911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5911_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 27434037 - 27433815
Alignment:
| Q |
10 |
gcacagaggatgcactaataatacctgaactctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttat |
109 |
Q |
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| T |
27434037 |
gcacagaggatgcactaataataccagaactctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttat |
27433938 |
T |
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| Q |
110 |
agaagatcaatggagaccaaattttgtccctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctg-acaattttcatatcttaga |
208 |
Q |
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| T |
27433937 |
agaagatcaatggagaccaaattttgtccctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgaacaattttcatatcttaga |
27433838 |
T |
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| Q |
209 |
taaattaatcgttaactcattat |
231 |
Q |
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| T |
27433837 |
taaattaatcgttaactcattat |
27433815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 27442620 - 27442809
Alignment:
| Q |
40 |
tctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttatagaagatcaatggagaccaaattttgtccc |
139 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
27442620 |
tctaacacagaaaaattaaattacacaacttcaataagtttattcaacttcatggacaaaaataatttataaaagaacaatggataccaaattttgtccc |
27442719 |
T |
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| Q |
140 |
tcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgacaattttcatatcttagataaattaatcgttaactcatt |
229 |
Q |
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| T |
27442720 |
tcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccacatttgtcatatctttgataaattaattggtaactcatt |
27442809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 27434126 - 27434039
Alignment:
| Q |
40 |
tctaacacggaaaaattaaactacacaacttcaataagtttattcaacttcatggacaaaaataatttatagaagatcaatggagacc |
127 |
Q |
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|||||||||||||||||||| |||||||||||||||| || ||||||||||| || ||| ||||| ||||| ||||||| |||||||| |
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| T |
27434126 |
tctaacacggaaaaattaaattacacaacttcaataaattcattcaacttcacgggcaacaataaattataaaagatcattggagacc |
27434039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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